| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H4g24802 | 4:4,207,295-4,209,633 | + | C2H4g27360 | CX4g035182 | LOC_Os04g10350 | Os04g0182200 | - | Detail |
| C1H4g04177 | 4:4,213,634-4,215,922 | - | C2H4g24237 | CX4g032170 | LOC_Os04g10360 | Os04g0182300 | - | Detail |
| C1H4g12559 | 4:4,223,766-4,244,689 | + | C2H4g25006 | CX4g032156 | LOC_Os04g10380 | Os04g0182650 | - | Detail |
| C1H4g07822 | 4:4,252,219-4,255,411 | - | C2H4g08700 | CX4g034981 | LOC_Os04g10400 | Os04g0182800 | ETFβ | Detail |
| C1H4g30986 | 4:4,271,462-4,272,037 | + | C2H4g00175 | CX4g033125 | LOC_Os04g10410 | Os04g0182875 | - | Detail |
| C1H4g14844 | 4:4,272,162-4,275,686 | + | C2H4g00175 | CX4g033125 | LOC_Os04g10410 | Os04g0182900 | - | Detail |
| C1H4g21941 | 4:4,278,915-4,287,340 | - | C2H4g19427 | CX4g036220 | LOC_Os04g10420 | Os04g0183100 | - | Detail |
| C1H4g31194 | 4:4,290,975-4,293,975 | + | C2H4g17515 | CX4g032018 | LOC_Os04g10770 | - | - | Detail |
| C1H4g29252 | 4:4,307,862-4,308,098 | - | - | CX4g032745 | - | - | - | Detail |
| C1H4g19812 | 4:4,344,320-4,347,331 | - | C2H4g16001 | CX4g032136 | LOC_Os04g09604 | Os04g0176200 | - | Detail |
| C1H4g11860 | 4:4,347,417-4,347,875 | - | C2H4g27334 | CX4g032136 | LOC_Os04g09654 | Os04g0175900 | - | Detail |
| C1H4g02342 | 4:4,359,374-4,363,783 | - | C2H4g09797 | CX4g036220 | LOC_Os04g10420 | Os04g0183100 | - | Detail |
| C1H4g18867 | 4:4,366,014-4,371,573 | + | C2H4g03609 | CX4g035351 | LOC_Os04g10434 | Os04g0184801 | - | Detail |
| C1H4g19839 | 4:4,396,062-4,399,042 | + | C2H4g16056 | CX4g035942 | LOC_Os04g10460 | Os04g0183500 | - | Detail |
| C1H4g20902 | 4:4,440,523-4,445,534 | + | C2H4g03832 | CX4g034818 | LOC_Os04g10530 | Os04g0184100 | - | Detail |
| C1H4g24756 | 4:4,447,043-4,449,244 | - | C2H4g15311 | CX4g033052 | LOC_Os04g09740 | Os01g0373400 | - | Detail |
| C1H4g09877 | 4:4,455,587-4,456,423 | + | C2H4g16196 | CX4g035942 | LOC_Os04g10569 | Os04g0184801 | - | Detail |
| C1H4g04912 | 4:4,459,747-4,461,484 | + | C2H4g22298 | CX4g034818 | LOC_Os04g10630 | Os04g0184100 | - | Detail |
| C1H4g10478 | 4:4,464,122-4,464,900 | + | C2H4g20970 | CX4g035942 | LOC_Os04g10640 | Os04g0185000 | - | Detail |
| C1H4g27981 | 4:4,465,931-4,468,578 | - | C2H4g20831 | CX4g035484 | LOC_Os04g10650 | Os04g0185100 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H3g08146 | 3:25,060,344-25,073,286 | + | C1H3g30763 | CX3g027759 | - | - | - | Detail |
| C2H3g06193 | 3:25,080,310-25,093,249 | - | C1H3g31689 | CX3g025545 | LOC_Os03g48140 | Os03g0686300 | - | Detail |
| C2H3g15650 | 3:25,099,612-25,102,820 | + | C1H3g17077 | CX3g025241 | LOC_Os03g48160 | Os03g0253100 | - | Detail |
| C2H3g12008 | 3:25,104,383-25,108,435 | + | C1H3g31064 | CX3g025276 | LOC_Os03g48170 | Os03g0686900 | FLO6 | Detail |
| C2H3g19404 | 3:25,109,095-25,114,669 | - | C1H3g04074 | CX3g025668 | LOC_Os03g51050 | Os03g0687000 | OsNPF2.4, NPF2.4, OsPTR2, PTR2 | Detail |
| C2H3g17935 | 3:25,127,611-25,131,595 | - | C1H3g27780 | CX3g029198 | LOC_Os03g48190 | Os03g0687200 | - | Detail |
| C2H3g12687 | 3:25,135,284-25,136,030 | - | C1H3g26805 | CX3g025750 | LOC_Os03g48200 | Os03g0687400 | - | Detail |
| C2H3g13078 | 3:25,137,917-25,138,663 | - | C1H3g31647 | CX3g029222 | LOC_Os03g48220 | Os03g0687700 | - | Detail |
| C2H3g02466 | 3:25,140,936-25,141,493 | - | C1H3g02479 | CX3g025750 | LOC_Os03g48225 | Os03g0687800 | - | Detail |
| C2H3g05793 | 3:25,142,535-25,143,269 | - | C1H3g12014 | CX3g028579 | LOC_Os03g48235 | Os03g0688000 | - | Detail |
| C2H3g06136 | 3:25,144,788-25,145,247 | - | C1H3g12256 | CX3g029222 | LOC_Os03g48220 | Os03g0687700 | - | Detail |
| C2H3g19874 | 3:25,146,922-25,151,844 | + | C1H3g24497 | CX3g029090 | LOC_Os03g48260 | Os03g0688200 | - | Detail |
| C2H3g05160 | 3:25,157,608-25,163,002 | + | C1H3g21570 | CX3g025253 | LOC_Os03g48270 | Os03g0688300 | CDPK9, OsCDPK9, OsCPK9 | Detail |
| C2H3g19979 | 3:25,186,796-25,214,847 | + | C1H3g15303 | CX3g027485 | LOC_Os03g48300 | Os03g0689100 | - | Detail |
| C2H3g24844 | 3:25,222,977-25,230,070 | + | C1H3g28879 | CX3g027452 | LOC_Os03g48310 | Os03g0689300 | - | Detail |
| C2H3g06110 | 3:25,231,632-25,235,399 | - | C1H3g09435 | CX3g026383 | LOC_Os03g48380 | Os03g0689900 | - | Detail |
| C2H3g14932 | 3:25,237,216-25,239,557 | + | C1H3g04287 | CX3g027552 | LOC_Os03g48390 | Os03g0690000 | - | Detail |
| C2H3g03020 | 3:25,282,883-25,286,063 | - | C1H3g28354 | CX3g028707 | LOC_Os03g48450 | Os03g0690600 | - | Detail |
| C2H3g18585 | 3:25,290,921-25,294,737 | + | C1H3g15398 | - | LOC_Os03g48471 | Os03g0690700 | - | Detail |
| C2H3g25812 | 3:25,324,182-25,326,537 | - | C1H3g11606 | CX3g027625 | LOC_Os03g48480 | Os03g0691400 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |