| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H4g07936 | 4:3,845,979-3,846,753 | - | C2H4g19699 | CX4g031672 | LOC_Os04g09720 | Os04g0176400 | - | Detail |
| C1H4g00886 | 4:3,858,267-3,862,987 | - | C2H4g19699 | CX4g031672 | LOC_Os04g09720 | Os04g0176400 | - | Detail |
| C1H4g30482 | 4:3,907,013-3,911,500 | - | C2H4g02357 | CX4g036574 | LOC_Os04g09770 | Os04g0177000 | - | Detail |
| C1H4g18497 | 4:3,913,645-3,914,572 | - | C2H4g05769 | - | LOC_Os04g09780 | Os04g0177100 | - | Detail |
| C1H4g30399 | 4:3,921,327-3,927,118 | - | C2H4g27475 | CX4g034078 | LOC_Os04g09800 | Os04g0177300 | OsCHR735, CHR735 | Detail |
| C1H4g22479 | 4:3,929,816-3,931,810 | - | C2H4g20561 | CX4g034820 | LOC_Os04g09810 | Os04g0177400 | - | Detail |
| C1H4g23867 | 4:3,937,603-3,937,944 | + | - | CX4g036109 | - | Os04g0177500 | - | Detail |
| C1H4g19750 | 4:3,939,617-3,953,493 | - | C2H4g20320 | CX4g036116 | - | Os04g0177600 | - | Detail |
| C1H4g12052 | 4:3,967,466-3,968,321 | + | C2H4g26728 | CX4g032774 | LOC_Os04g09900 | Os04g0179700 | OsKS4, OsKSL4, OsDTS2, OsKSL1 | Detail |
| C1H4g09839 | 4:3,968,659-3,973,655 | + | C2H4g23853 | CX4g032774 | LOC_Os04g09900 | Os04g0178300 | OsCPS4, Os-CPS4, OsCyc1, OsCPSsyn | Detail |
| C1H4g28574 | 4:3,984,451-3,986,302 | - | C2H4g09237 | CX4g036126 | LOC_Os04g09920 | Os04g0178400 | CYP99A3 | Detail |
| C1H4g09507 | 4:4,009,887-4,010,539 | - | - | CX4g036382 | - | - | - | Detail |
| C1H4g30336 | 4:4,027,038-4,027,982 | - | C2H4g09020 | CX4g033846 | LOC_Os04g10000 | Os04g0179100 | - | Detail |
| C1H4g01524 | 4:4,033,530-4,034,485 | - | C2H4g10076 | CX4g035289 | LOC_Os04g10010 | Os04g0179200 | - | Detail |
| C1H4g08248 | 4:4,076,377-4,081,777 | - | C2H4g06763 | CX4g034737 | LOC_Os04g10060 | Os04g0179700 | OsKS4, OsKSL4, OsDTS2, OsKSL1 | Detail |
| C1H4g04065 | 4:4,105,075-4,106,760 | + | C2H4g06078 | CX4g034919 | LOC_Os04g10160 | Os04g0180400 | - | Detail |
| C1H4g03949 | 4:4,166,936-4,169,530 | - | C2H4g21850 | CX4g035733 | LOC_Os04g10210 | Os04g0221000 | - | Detail |
| C1H4g10325 | 4:4,175,560-4,178,590 | - | C2H4g14385 | CX4g036149 | LOC_Os04g10240 | Os04g0181100 | - | Detail |
| C1H4g30056 | 4:4,184,444-4,189,768 | - | C2H4g14846 | CX4g035099 | LOC_Os04g10260 | Os04g0181300 | - | Detail |
| C1H4g22965 | 4:4,192,377-4,193,801 | + | C2H4g02690 | CX4g035182 | LOC_Os04g10350 | Os04g0181901 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H4g05524 | 4:24,217,402-24,220,620 | + | C1H4g01520 | CX4g036555 | LOC_Os04g47320 | Os04g0561000 | - | Detail |
| C2H4g24329 | 4:24,222,470-24,223,252 | - | C1H4g11046 | CX4g033871 | LOC_Os04g47330 | Os04g0561200 | OsROP | Detail |
| C2H4g08693 | 4:24,228,874-24,231,959 | + | C1H4g17483 | CX4g034561 | LOC_Os04g47360 | Os04g0561500 | - | Detail |
| C2H4g04530 | 4:24,233,807-24,235,386 | + | C1H4g22676 | CX4g034510 | LOC_Os04g47370 | Os04g0561600 | - | Detail |
| C2H4g06692 | 4:24,237,015-24,241,597 | - | C1H4g16662 | CX4g035518 | LOC_Os04g47380 | Os04g0561700 | - | Detail |
| C2H4g02963 | 4:24,242,832-24,244,297 | - | C1H4g25205 | CX4g033152 | LOC_Os04g47390 | Os04g0561800 | - | Detail |
| C2H4g29534 | 4:24,247,284-24,250,341 | - | C1H4g17277 | CX4g032801 | LOC_Os04g47400 | Os04g0561900 | - | Detail |
| C2H4g11725 | 4:24,251,322-24,257,953 | + | C1H4g25981 | CX4g034619 | LOC_Os04g47410 | Os04g0562000 | - | Detail |
| C2H4g01488 | 4:24,259,422-24,261,365 | - | C1H4g01383 | CX4g033511 | LOC_Os04g47420 | Os04g0562100 | OsLHT5 | Detail |
| C2H4g15916 | 4:24,275,781-24,276,836 | + | C1H4g04777 | - | LOC_Os04g47450 | Os04g0562500 | - | Detail |
| C2H4g02352 | 4:24,288,214-24,292,771 | + | C1H4g07137 | CX4g032344 | LOC_Os04g47480 | Os04g0562800 | - | Detail |
| C2H4g30154 | 4:24,294,473-24,298,677 | - | C1H4g14768 | CX4g031395 | LOC_Os04g47520 | Os04g0563000 | - | Detail |
| C2H4g13189 | 4:24,305,351-24,309,231 | - | C1H4g27503 | CX4g034508 | LOC_Os04g47530 | Os04g0563100 | - | Detail |
| C2H4g09598 | 4:24,309,363-24,311,585 | + | C1H4g12075 | CX4g032577 | LOC_Os04g47550 | Os04g0563300 | - | Detail |
| C2H4g06274 | 4:24,315,809-24,318,234 | - | C1H4g30163 | CX4g036609 | LOC_Os04g47580 | Os04g0563700 | - | Detail |
| C2H4g20502 | 4:24,320,764-24,337,425 | - | C1H4g25027 | CX4g036534 | LOC_Os04g47590 | Os04g0563801 | - | Detail |
| C2H4g03895 | 4:24,351,829-24,355,202 | - | C1H4g07757 | CX4g036655 | LOC_Os04g47620 | Os04g0563900 | - | Detail |
| C2H4g00625 | 4:24,359,497-24,361,668 | - | C1H4g23508 | CX4g036311 | LOC_Os04g47640 | Os04g0564000 | - | Detail |
| C2H4g08419 | 4:24,364,901-24,366,691 | + | C1H4g06710 | CX4g031734 | LOC_Os04g47680 | Os04g0564500 | - | Detail |
| C2H4g16306 | 4:24,367,704-24,369,981 | + | C1H4g12463 | CX4g034730 | LOC_Os04g47690 | Os04g0564600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |