| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H4g07936 | 4:3,845,979-3,846,753 | - | C2H4g19699 | CX4g031672 | LOC_Os04g09720 | Os04g0176400 | - | Detail |
| C1H4g00886 | 4:3,858,267-3,862,987 | - | C2H4g19699 | CX4g031672 | LOC_Os04g09720 | Os04g0176400 | - | Detail |
| C1H4g30482 | 4:3,907,013-3,911,500 | - | C2H4g02357 | CX4g036574 | LOC_Os04g09770 | Os04g0177000 | - | Detail |
| C1H4g18497 | 4:3,913,645-3,914,572 | - | C2H4g05769 | - | LOC_Os04g09780 | Os04g0177100 | - | Detail |
| C1H4g30399 | 4:3,921,327-3,927,118 | - | C2H4g27475 | CX4g034078 | LOC_Os04g09800 | Os04g0177300 | OsCHR735, CHR735 | Detail |
| C1H4g22479 | 4:3,929,816-3,931,810 | - | C2H4g20561 | CX4g034820 | LOC_Os04g09810 | Os04g0177400 | - | Detail |
| C1H4g23867 | 4:3,937,603-3,937,944 | + | - | CX4g036109 | - | Os04g0177500 | - | Detail |
| C1H4g19750 | 4:3,939,617-3,953,493 | - | C2H4g20320 | CX4g036116 | - | Os04g0177600 | - | Detail |
| C1H4g12052 | 4:3,967,466-3,968,321 | + | C2H4g26728 | CX4g032774 | LOC_Os04g09900 | Os04g0179700 | OsKS4, OsKSL4, OsDTS2, OsKSL1 | Detail |
| C1H4g09839 | 4:3,968,659-3,973,655 | + | C2H4g23853 | CX4g032774 | LOC_Os04g09900 | Os04g0178300 | OsCPS4, Os-CPS4, OsCyc1, OsCPSsyn | Detail |
| C1H4g28574 | 4:3,984,451-3,986,302 | - | C2H4g09237 | CX4g036126 | LOC_Os04g09920 | Os04g0178400 | CYP99A3 | Detail |
| C1H4g09507 | 4:4,009,887-4,010,539 | - | - | CX4g036382 | - | - | - | Detail |
| C1H4g30336 | 4:4,027,038-4,027,982 | - | C2H4g09020 | CX4g033846 | LOC_Os04g10000 | Os04g0179100 | - | Detail |
| C1H4g01524 | 4:4,033,530-4,034,485 | - | C2H4g10076 | CX4g035289 | LOC_Os04g10010 | Os04g0179200 | - | Detail |
| C1H4g08248 | 4:4,076,377-4,081,777 | - | C2H4g06763 | CX4g034737 | LOC_Os04g10060 | Os04g0179700 | OsKS4, OsKSL4, OsDTS2, OsKSL1 | Detail |
| C1H4g04065 | 4:4,105,075-4,106,760 | + | C2H4g06078 | CX4g034919 | LOC_Os04g10160 | Os04g0180400 | - | Detail |
| C1H4g03949 | 4:4,166,936-4,169,530 | - | C2H4g21850 | CX4g035733 | LOC_Os04g10210 | Os04g0221000 | - | Detail |
| C1H4g10325 | 4:4,175,560-4,178,590 | - | C2H4g14385 | CX4g036149 | LOC_Os04g10240 | Os04g0181100 | - | Detail |
| C1H4g30056 | 4:4,184,444-4,189,768 | - | C2H4g14846 | CX4g035099 | LOC_Os04g10260 | Os04g0181300 | - | Detail |
| C1H4g22965 | 4:4,192,377-4,193,801 | + | C2H4g02690 | CX4g035182 | LOC_Os04g10350 | Os04g0181901 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H2g17764 | 2:16,383,359-16,384,768 | + | C1H2g17511 | CX2g024525 | LOC_Os02g28340 | Os02g0485000 | - | Detail |
| C2H2g19393 | 2:16,408,550-16,410,770 | - | C1H2g19424 | - | - | - | - | Detail |
| C2H2g27926 | 2:16,443,788-16,447,280 | + | C1H2g15604 | CX2g020358 | LOC_Os02g28580 | Os02g0487300 | - | Detail |
| C2H2g16337 | 2:16,470,195-16,472,328 | + | C1H2g04842 | CX2g020358 | LOC_Os02g28660 | Os02g0487300 | - | Detail |
| C2H2g28503 | 2:16,480,601-16,482,393 | + | C1H2g29692 | CX2g019368 | LOC_Os02g28680 | Os02g0487300 | - | Detail |
| C2H2g13549 | 2:16,490,753-16,494,448 | - | C1H2g25610 | CX2g019609 | LOC_Os02g28720 | Os02g0488600 | - | Detail |
| C2H2g09159 | 2:16,526,872-16,529,420 | + | C1H2g24376 | CX2g019939 | LOC_Os02g28810 | Os02g0489400 | - | Detail |
| C2H2g07433 | 2:16,531,250-16,534,663 | + | C1H2g28295 | CX2g021075 | LOC_Os02g28820 | Os02g0489500 | - | Detail |
| C2H2g29338 | 2:16,535,522-16,547,844 | - | C1H2g07614 | CX2g022951 | LOC_Os02g28830 | Os02g0489550 | - | Detail |
| C2H2g10751 | 2:16,561,956-16,569,651 | + | C1H2g03753 | CX2g022420 | LOC_Os02g28850 | Os02g0489800 | - | Detail |
| C2H2g23190 | 2:16,571,593-16,572,016 | + | C1H2g30410 | - | - | - | - | Detail |
| C2H2g28147 | 2:16,572,313-16,572,666 | + | C1H2g18528 | CX2g020775 | - | - | - | Detail |
| C2H2g14694 | 2:16,573,416-16,576,582 | + | C1H2g12378 | CX2g024603 | LOC_Os02g28870 | Os02g0490000 | OsPUB73 | Detail |
| C2H2g19151 | 2:16,592,116-16,594,178 | + | C1H2g31655 | CX2g020830 | LOC_Os02g28900 | Os02g0490500 | - | Detail |
| C2H2g16996 | 2:16,599,152-16,600,759 | - | C1H2g05275 | CX2g022060 | LOC_Os02g28900 | Os02g0490500 | - | Detail |
| C2H2g26220 | 2:16,602,987-16,603,998 | + | - | CX2g020042 | - | - | - | Detail |
| C2H2g25066 | 2:16,625,275-16,626,849 | + | C1H2g10622 | CX2g024900 | LOC_Os02g28900 | Os02g0490500 | - | Detail |
| C2H2g22171 | 2:16,655,454-16,659,558 | - | C1H2g23595 | CX2g022120 | LOC_Os02g28980 | Os02g0491400 | rFKBP75 | Detail |
| C2H2g20082 | 2:16,677,034-16,677,843 | - | C1H2g19165 | CX2g019698 | LOC_Os02g29000 | Os02g0491600 | - | Detail |
| C2H2g19644 | 2:16,679,269-16,680,029 | + | C1H2g09173 | CX2g023919 | LOC_Os02g29010 | Os02g0491700 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |