| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H4g07936 | 4:3,845,979-3,846,753 | - | C2H4g19699 | CX4g031672 | LOC_Os04g09720 | Os04g0176400 | - | Detail |
| C1H4g00886 | 4:3,858,267-3,862,987 | - | C2H4g19699 | CX4g031672 | LOC_Os04g09720 | Os04g0176400 | - | Detail |
| C1H4g30482 | 4:3,907,013-3,911,500 | - | C2H4g02357 | CX4g036574 | LOC_Os04g09770 | Os04g0177000 | - | Detail |
| C1H4g18497 | 4:3,913,645-3,914,572 | - | C2H4g05769 | - | LOC_Os04g09780 | Os04g0177100 | - | Detail |
| C1H4g30399 | 4:3,921,327-3,927,118 | - | C2H4g27475 | CX4g034078 | LOC_Os04g09800 | Os04g0177300 | OsCHR735, CHR735 | Detail |
| C1H4g22479 | 4:3,929,816-3,931,810 | - | C2H4g20561 | CX4g034820 | LOC_Os04g09810 | Os04g0177400 | - | Detail |
| C1H4g23867 | 4:3,937,603-3,937,944 | + | - | CX4g036109 | - | Os04g0177500 | - | Detail |
| C1H4g19750 | 4:3,939,617-3,953,493 | - | C2H4g20320 | CX4g036116 | - | Os04g0177600 | - | Detail |
| C1H4g12052 | 4:3,967,466-3,968,321 | + | C2H4g26728 | CX4g032774 | LOC_Os04g09900 | Os04g0179700 | OsKS4, OsKSL4, OsDTS2, OsKSL1 | Detail |
| C1H4g09839 | 4:3,968,659-3,973,655 | + | C2H4g23853 | CX4g032774 | LOC_Os04g09900 | Os04g0178300 | OsCPS4, Os-CPS4, OsCyc1, OsCPSsyn | Detail |
| C1H4g28574 | 4:3,984,451-3,986,302 | - | C2H4g09237 | CX4g036126 | LOC_Os04g09920 | Os04g0178400 | CYP99A3 | Detail |
| C1H4g09507 | 4:4,009,887-4,010,539 | - | - | CX4g036382 | - | - | - | Detail |
| C1H4g30336 | 4:4,027,038-4,027,982 | - | C2H4g09020 | CX4g033846 | LOC_Os04g10000 | Os04g0179100 | - | Detail |
| C1H4g01524 | 4:4,033,530-4,034,485 | - | C2H4g10076 | CX4g035289 | LOC_Os04g10010 | Os04g0179200 | - | Detail |
| C1H4g08248 | 4:4,076,377-4,081,777 | - | C2H4g06763 | CX4g034737 | LOC_Os04g10060 | Os04g0179700 | OsKS4, OsKSL4, OsDTS2, OsKSL1 | Detail |
| C1H4g04065 | 4:4,105,075-4,106,760 | + | C2H4g06078 | CX4g034919 | LOC_Os04g10160 | Os04g0180400 | - | Detail |
| C1H4g03949 | 4:4,166,936-4,169,530 | - | C2H4g21850 | CX4g035733 | LOC_Os04g10210 | Os04g0221000 | - | Detail |
| C1H4g10325 | 4:4,175,560-4,178,590 | - | C2H4g14385 | CX4g036149 | LOC_Os04g10240 | Os04g0181100 | - | Detail |
| C1H4g30056 | 4:4,184,444-4,189,768 | - | C2H4g14846 | CX4g035099 | LOC_Os04g10260 | Os04g0181300 | - | Detail |
| C1H4g22965 | 4:4,192,377-4,193,801 | + | C2H4g02690 | CX4g035182 | LOC_Os04g10350 | Os04g0181901 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H9g05844 | 9:10,283,906-10,288,529 | - | C1H9g09897 | CX9g055654 | LOC_Os09g20090 | Os09g0365900 | OsORAP1, OsAAO4 | Detail |
| C2H9g09121 | 9:10,306,961-10,308,376 | - | - | CX9g055839 | LOC_Os09g20170 | Os09g0366800 | - | Detail |
| C2H9g09091 | 9:10,321,991-10,323,487 | - | C1H9g15571 | CX9g054852 | LOC_Os09g20200 | - | - | Detail |
| C2H9g29920 | 9:10,337,303-10,338,225 | + | C1H9g02207 | CX9g056871 | LOC_Os09g20240 | Os09g0367900 | - | Detail |
| C2H9g28396 | 9:10,353,980-10,359,002 | + | - | - | - | Os09g0368250 | - | Detail |
| C2H9g14431 | 9:10,358,627-10,359,108 | - | C1H9g30662 | CX9g056709 | LOC_Os09g20260 | Os09g0368200 | - | Detail |
| C2H9g13000 | 9:10,359,249-10,360,580 | + | - | CX9g057677 | - | Os09g0368400 | - | Detail |
| C2H9g01723 | 9:10,360,086-10,361,859 | - | C1H9g30662 | CX9g056709 | LOC_Os09g20284 | Os09g0368200 | - | Detail |
| C2H9g01995 | 9:10,362,877-10,366,009 | - | C1H9g08171 | CX9g056709 | LOC_Os09g20284 | Os09g0368200 | - | Detail |
| C2H9g28312 | 9:10,368,827-10,370,862 | - | C1H9g26989 | CX9g056709 | LOC_Os09g20284 | Os09g0368200 | - | Detail |
| C2H9g01360 | 9:10,377,582-10,381,853 | - | C1H9g08171 | CX9g056709 | LOC_Os09g20284 | Os09g0368500 | PAO7, OsPAO7, OsPAO3 | Detail |
| C2H9g13990 | 9:10,384,594-10,384,809 | - | C1H9g21942 | - | - | - | - | Detail |
| C2H9g11239 | 9:10,399,165-10,404,403 | + | C1H9g07275 | CX9g057276 | LOC_Os09g20340 | Os09g0368900 | - | Detail |
| C2H9g03345 | 9:10,421,488-10,422,054 | + | C1H9g13671 | - | - | - | - | Detail |
| C2H9g15745 | 9:10,422,077-10,422,937 | + | C1H9g13671 | CX9g057652 | LOC_Os09g20350 | Os09g0369000 | OsDREB6 | Detail |
| C2H9g22049 | 9:10,445,849-10,448,187 | + | C1H9g26600 | CX9g055870 | LOC_Os09g20390 | Os09g0369400 | OsTPP7 | Detail |
| C2H9g18178 | 9:10,457,655-10,459,499 | - | C1H9g20254 | CX9g058083 | LOC_Os09g20400 | Os09g0369500 | - | Detail |
| C2H9g15437 | 9:10,479,675-10,483,826 | - | C1H9g05408 | CX9g057823 | LOC_Os09g20430 | Os09g0370200 | - | Detail |
| C2H9g01776 | 9:10,496,312-10,497,997 | + | - | CX9g057287 | LOC_Os09g20460 | Os09g0370500 | - | Detail |
| C2H9g06892 | 9:10,520,278-10,523,345 | + | C1H9g09768 | - | LOC_Os09g20480 | Os09g0371000 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |