| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H4g10229 | 4:3,577,684-3,577,877 | + | - | - | LOC_Os04g08836 | - | - | Detail |
| C1H4g24051 | 4:3,584,279-3,586,466 | + | C2H4g20337 | CX4g034654 | LOC_Os04g08824 | Os04g0171600 | - | Detail |
| C1H4g18038 | 4:3,590,351-3,594,946 | + | C2H4g09503 | CX4g033450 | LOC_Os04g08828 | Os04g0171800 | - | Detail |
| C1H4g07911 | 4:3,604,068-3,604,520 | + | - | - | - | - | - | Detail |
| C1H4g20508 | 4:3,605,693-3,607,000 | - | C2H4g13106 | CX4g031545 | LOC_Os04g09260 | Os04g0172400 | - | Detail |
| C1H4g22697 | 4:3,620,658-3,621,335 | - | C2H4g19448 | CX4g032971 | LOC_Os04g09390 | Os04g0173800 | - | Detail |
| C1H4g22795 | 4:3,634,434-3,635,325 | - | C2H4g16323 | CX4g031393 | LOC_Os09g03190 | Os09g0120033 | - | Detail |
| C1H4g23989 | 4:3,661,405-3,663,925 | - | C2H4g22590 | CX4g034441 | LOC_Os04g08828 | Os04g0171800 | - | Detail |
| C1H4g13047 | 4:3,679,975-3,681,887 | - | C2H4g26043 | CX4g033229 | LOC_Os04g08828 | Os04g0171800 | - | Detail |
| C1H4g12448 | 4:3,685,568-3,686,799 | - | C2H4g09296 | CX4g035209 | LOC_Os04g09520 | - | - | Detail |
| C1H4g29255 | 4:3,715,693-3,719,224 | + | C2H4g00337 | CX4g032438 | - | - | - | Detail |
| C1H4g15809 | 4:3,726,385-3,727,878 | - | C2H4g18023 | CX4g033765 | LOC_Os04g09530 | Os04g0174800 | - | Detail |
| C1H4g04587 | 4:3,739,003-3,742,038 | + | C2H4g07222 | CX4g031895 | LOC_Os04g09540 | Os04g0174900 | - | Detail |
| C1H4g23242 | 4:3,757,126-3,757,566 | + | - | CX4g036518 | LOC_Os04g09570 | Os04g0175400 | - | Detail |
| C1H4g04828 | 4:3,767,701-3,769,020 | - | C2H4g13106 | CX4g034555 | LOC_Os04g09590 | Os04g0175500 | - | Detail |
| C1H4g26996 | 4:3,786,208-3,788,878 | + | C2H4g19878 | CX4g033442 | LOC_Os04g09604 | Os04g0175600 | - | Detail |
| C1H4g27776 | 4:3,810,951-3,817,402 | + | C2H4g01777 | CX4g036641 | LOC_Os04g09654 | Os04g0175900 | - | Detail |
| C1H4g04322 | 4:3,822,889-3,823,776 | + | C2H4g06147 | CX4g031947 | LOC_Os04g09654 | Os04g0175900 | - | Detail |
| C1H4g25500 | 4:3,826,139-3,827,767 | - | C2H4g04542 | CX4g031947 | LOC_Os04g09670 | Os04g0176200 | - | Detail |
| C1H4g17119 | 4:3,830,157-3,830,702 | - | C2H4g04542 | CX4g031947 | LOC_Os04g09680 | Os04g0176200 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H5g03508 | 5:7,583,049-7,583,942 | - | C1H5g21179 | CX5g038349 | LOC_Os05g15770 | Os05g0247100 | DIP3, XIP, OsHI-XIP | Detail |
| C2H5g09723 | 5:7,630,074-7,639,532 | - | C1H5g04227 | CX5g040966 | LOC_Os05g15890 | Os05g0247900 | OsCHR713, CHR713 | Detail |
| C2H5g16380 | 5:7,655,551-7,657,410 | - | C1H5g29560 | CX5g038055 | LOC_Os05g16000 | Os05g0249800 | - | Detail |
| C2H5g23841 | 5:7,670,803-7,671,060 | - | C1H5g10784 | CX5g038858 | LOC_Os05g16054 | Os05g0249100 | - | Detail |
| C2H5g02175 | 5:7,695,276-7,697,536 | - | C1H5g29560 | CX5g039101 | LOC_Os05g16100 | Os05g0249800 | - | Detail |
| C2H5g15350 | 5:7,707,412-7,710,911 | - | C1H5g23916 | CX5g039101 | LOC_Os05g16140 | Os05g0250000 | - | Detail |
| C2H5g06835 | 5:7,715,435-7,719,297 | - | C1H5g17383 | CX5g039101 | LOC_Os05g16240 | Os05g0250200 | - | Detail |
| C2H5g11862 | 5:7,723,279-7,726,185 | - | C1H5g19855 | CX5g041055 | LOC_Os05g16200 | Os05g0250700 | - | Detail |
| C2H5g27100 | 5:7,736,709-7,737,431 | - | - | - | - | - | - | Detail |
| C2H5g08541 | 5:7,756,996-7,758,426 | - | - | CX5g041082 | - | - | - | Detail |
| C2H5g10190 | 5:7,761,947-7,765,438 | - | C1H5g18798 | CX5g038245 | LOC_Os05g16200 | Os05g0250700 | - | Detail |
| C2H5g00039 | 5:7,788,239-7,791,656 | - | C1H5g13669 | - | - | - | - | Detail |
| C2H5g10863 | 5:7,791,689-7,792,726 | - | C1H5g13669 | CX5g039794 | LOC_Os05g16230 | Os05g0251200 | - | Detail |
| C2H5g12394 | 5:7,796,358-7,797,614 | - | C1H5g11478 | CX5g039447 | LOC_Os05g16240 | Os05g0251200 | - | Detail |
| C2H5g03213 | 5:7,799,407-7,803,760 | + | C1H5g13415 | CX5g038303 | LOC_Os05g16250 | Os05g0251400 | OsBVF1, P31<sup>comet</sup> | Detail |
| C2H5g18069 | 5:7,804,814-7,808,658 | + | C1H5g25482 | CX5g038303 | - | Os05g0251500 | - | Detail |
| C2H5g11253 | 5:7,812,460-7,816,343 | + | C1H5g22880 | CX5g037603 | - | - | - | Detail |
| C2H5g17103 | 5:7,813,545-7,819,371 | - | C1H5g03577 | CX5g040268 | LOC_Os05g16280 | Os05g0251900 | - | Detail |
| C2H5g24772 | 5:7,822,367-7,827,353 | - | C1H5g13508 | CX5g041044 | LOC_Os05g16290 | Os05g0252000 | - | Detail |
| C2H5g01822 | 5:7,838,754-7,840,413 | - | C1H5g26814 | CX5g037929 | LOC_Os05g16300 | Os05g0252100 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |