| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H4g26497 | 4:3,214,424-3,216,214 | - | C2H4g08785 | CX4g033688 | LOC_Os04g08290 | Os04g0165200 | ART2 | Detail |
| C1H4g15929 | 4:3,222,135-3,223,120 | + | - | CX4g033043 | LOC_Os04g08310 | Os04g0165300 | - | Detail |
| C1H4g20789 | 4:3,226,239-3,228,095 | - | C2H4g02342 | CX4g035325 | LOC_Os04g08320 | Os04g0165400 | - | Detail |
| C1H4g12785 | 4:3,230,389-3,230,700 | - | C2H4g19422 | CX4g035853 | LOC_Os04g08330 | Os04g0165500 | - | Detail |
| C1H4g31381 | 4:3,245,804-3,247,931 | + | C2H4g06874 | CX4g036241 | LOC_Os04g08340 | Os04g0165600 | - | Detail |
| C1H4g30280 | 4:3,250,393-3,254,434 | - | C2H4g04495 | CX4g034083 | LOC_Os04g08350 | Os04g0165700 | - | Detail |
| C1H4g18120 | 4:3,262,917-3,265,964 | - | C2H4g24204 | CX4g034989 | LOC_Os04g08390 | Os04g0166000 | - | Detail |
| C1H4g16596 | 4:3,291,349-3,296,428 | - | C2H4g25306 | CX4g036344 | LOC_Os04g08410 | Os04g0166400 | - | Detail |
| C1H4g13488 | 4:3,322,176-3,326,018 | + | C2H4g16904 | CX4g036063 | LOC_Os04g08450 | Os04g0166600 | OsSFL1 | Detail |
| C1H4g11999 | 4:3,334,056-3,336,300 | + | C2H4g26054 | CX4g033810 | LOC_Os04g08460 | - | - | Detail |
| C1H4g21471 | 4:3,370,486-3,373,209 | - | C2H4g21134 | CX4g033225 | LOC_Os04g08550 | Os04g0167800 | - | Detail |
| C1H4g06121 | 4:3,377,126-3,378,118 | - | C2H4g04423 | CX4g034291 | - | Os04g0167875 | - | Detail |
| C1H4g27562 | 4:3,381,940-3,384,383 | - | C2H4g12568 | CX4g034291 | - | Os04g0167900 | - | Detail |
| C1H4g05004 | 4:3,385,590-3,386,226 | - | C2H4g02316 | CX4g032052 | LOC_Os04g08570 | Os04g0168000 | - | Detail |
| C1H4g17104 | 4:3,407,004-3,407,471 | - | - | CX4g034069 | LOC_Os04g08600 | Os04g0168100 | SRO | Detail |
| C1H4g08725 | 4:3,467,959-3,468,944 | - | - | CX4g036254 | LOC_Os04g08730 | - | - | Detail |
| C1H4g12046 | 4:3,475,828-3,479,747 | + | C2H4g13508 | CX4g033888 | LOC_Os04g08740 | Os04g0169100 | ETR2, OsETR2, OS-ETR2, etr2, OsPK1, PK1, ERL1, OsERL1, OsERS3 | Detail |
| C1H4g26213 | 4:3,498,442-3,500,124 | - | C2H4g19627 | CX4g036277 | LOC_Os04g08764 | Os04g0169500 | - | Detail |
| C1H4g05807 | 4:3,567,302-3,569,530 | + | C2H4g04047 | CX4g034654 | LOC_Os04g08824 | Os04g0171600 | - | Detail |
| C1H4g06403 | 4:3,573,267-3,577,599 | + | C2H4g27784 | CX4g031382 | LOC_Os04g08828 | Os04g0171800 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H9g08049 | 9:17,106,192-17,110,239 | + | C1H9g09147 | CX9g055676 | LOC_Os09g34280 | Os09g0518500 | - | Detail |
| C2H9g03145 | 9:17,111,112-17,112,738 | - | C1H9g05389 | CX9g056764 | LOC_Os09g34290 | Os09g0518600 | - | Detail |
| C2H9g00047 | 9:17,113,261-17,117,988 | - | C1H9g00022 | CX9g055254 | LOC_Os09g34300 | Os09g0518700 | - | Detail |
| C2H9g05387 | 9:17,121,018-17,121,364 | + | C1H9g22729 | CX9g057932 | LOC_Os09g34310 | - | - | Detail |
| C2H9g03669 | 9:17,136,833-17,137,684 | - | C1H9g17507 | CX9g055953 | LOC_Os09g34330 | Os09g0519100 | - | Detail |
| C2H9g27958 | 9:17,152,641-17,153,345 | - | C1H9g15652 | - | - | - | - | Detail |
| C2H9g18367 | 9:17,154,193-17,154,728 | - | - | CX9g055320 | - | - | - | Detail |
| C2H9g09976 | 9:17,169,909-17,170,387 | - | C1H9g20303 | CX9g055247 | LOC_Os09g34850 | Os09g0520100 | - | Detail |
| C2H9g00711 | 9:17,173,961-17,177,726 | + | C1H9g03744 | CX9g055700 | LOC_Os09g34860 | Os09g0520200 | - | Detail |
| C2H9g21344 | 9:17,183,328-17,186,760 | + | C1H9g02310 | CX9g057384 | LOC_Os09g34880 | Os09g0520400 | OsbZIP76 | Detail |
| C2H9g01771 | 9:17,187,648-17,188,566 | - | C1H9g04530 | CX9g055638 | LOC_Os09g34890 | Os09g0520500 | - | Detail |
| C2H9g21190 | 9:17,194,191-17,196,038 | + | C1H9g24828 | CX9g056986 | LOC_Os09g32780 | - | - | Detail |
| C2H9g04653 | 9:17,198,200-17,201,593 | - | C1H9g25767 | CX9g055686 | LOC_Os09g34900 | Os09g0520600 | - | Detail |
| C2H9g24414 | 9:17,203,671-17,208,113 | + | C1H9g15041 | CX9g058165 | LOC_Os09g34910 | Os09g0520700 | - | Detail |
| C2H9g26435 | 9:17,210,613-17,212,283 | - | C1H9g08027 | CX9g057097 | LOC_Os09g34920 | Os09g0520800 | - | Detail |
| C2H9g20646 | 9:17,217,677-17,219,140 | + | C1H9g02380 | CX9g056068 | LOC_Os09g34930 | Os09g0521100 | - | Detail |
| C2H9g27081 | 9:17,224,566-17,224,824 | + | - | - | - | - | - | Detail |
| C2H9g13839 | 9:17,224,975-17,225,742 | + | - | - | - | Os09g0521350 | - | Detail |
| C2H9g14810 | 9:17,228,140-17,231,908 | + | C1H9g10520 | CX9g057233 | LOC_Os09g34960 | Os09g0521400 | - | Detail |
| C2H9g26372 | 9:17,232,528-17,235,955 | - | C1H9g25845 | CX9g055738 | LOC_Os09g34970 | Os09g0521500 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |