| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H4g15337 | 4:2,989,404-2,990,624 | - | C2H4g06548 | CX4g035400 | LOC_Os04g07830 | Os04g0160600 | - | Detail |
| C1H4g12963 | 4:3,035,202-3,037,424 | + | C2H4g27562 | CX4g033885 | LOC_Os04g07890 | Os04g0161100 | - | Detail |
| C1H4g07373 | 4:3,044,478-3,046,000 | + | C2H4g26223 | CX4g033924 | LOC_Os04g07920 | Os04g0161400 | - | Detail |
| C1H4g07816 | 4:3,050,056-3,050,562 | + | - | CX4g033208 | LOC_Os04g07930 | - | - | Detail |
| C1H4g24705 | 4:3,078,723-3,078,983 | + | - | - | - | - | - | Detail |
| C1H4g19033 | 4:3,092,889-3,108,684 | + | C2H4g10368 | CX4g034915 | LOC_Os04g08034 | Os04g0162100 | - | Detail |
| C1H4g24860 | 4:3,114,200-3,115,455 | - | C2H4g30421 | - | - | - | - | Detail |
| C1H4g29541 | 4:3,114,306-3,115,346 | + | C2H4g24447 | CX4g032410 | LOC_Os04g08060 | Os04g0162500 | - | Detail |
| C1H4g24154 | 4:3,123,935-3,124,225 | + | C2H4g00154 | CX4g031783 | - | - | - | Detail |
| C1H4g13417 | 4:3,129,489-3,130,697 | - | C2H4g09598 | CX4g031910 | LOC_Os04g08070 | Os04g0162600 | - | Detail |
| C1H4g29100 | 4:3,141,020-3,142,960 | + | C2H4g27755 | CX4g031878 | LOC_Os04g08080 | Os04g0162800 | - | Detail |
| C1H4g17619 | 4:3,143,047-3,143,274 | + | C2H4g27755 | CX4g031878 | LOC_Os04g08080 | Os04g0162800 | - | Detail |
| C1H4g24485 | 4:3,149,535-3,150,746 | - | C2H4g09598 | CX4g031910 | LOC_Os04g08070 | Os04g0162600 | - | Detail |
| C1H4g00901 | 4:3,163,608-3,164,791 | + | C2H4g18612 | - | LOC_Os04g08180 | - | - | Detail |
| C1H4g25842 | 4:3,167,124-3,170,776 | + | C2H4g29845 | CX4g033256 | LOC_Os04g08190 | Os04g0163800 | - | Detail |
| C1H4g09408 | 4:3,167,301-3,167,720 | - | C2H4g24428 | CX4g033304 | - | Os04g0155750 | - | Detail |
| C1H4g05235 | 4:3,174,722-3,176,929 | - | C2H4g27755 | CX4g032360 | LOC_Os04g08200 | Os04g0162800 | - | Detail |
| C1H4g02074 | 4:3,189,244-3,190,563 | - | C2H4g09598 | CX4g031910 | LOC_Os04g08250 | Os04g0164701 | - | Detail |
| C1H4g06415 | 4:3,193,333-3,206,423 | + | C2H4g26409 | CX4g034642 | - | Os04g0164900 | - | Detail |
| C1H4g23865 | 4:3,208,108-3,209,701 | - | C2H4g26447 | CX4g033506 | - | Os04g0165000 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H4g14659 | 4:28,616,883-28,626,167 | - | C1H4g09395 | CX4g033850 | LOC_Os04g55730 | Os04g0650900 | - | Detail |
| C2H4g14244 | 4:28,626,940-28,628,324 | - | C1H4g15692 | CX4g032222 | LOC_Os04g55740 | Os04g0651000 | - | Detail |
| C2H4g04267 | 4:28,645,746-28,646,433 | - | C1H4g22868 | CX4g035054 | LOC_Os04g57920 | Os04g0651600 | - | Detail |
| C2H4g03455 | 4:28,660,914-28,666,233 | - | C1H4g05341 | CX4g033402 | LOC_Os04g55800 | Os04g0652400 | - | Detail |
| C2H4g14893 | 4:28,663,075-28,665,418 | + | - | - | - | Os04g0652450 | - | Detail |
| C2H4g29917 | 4:28,673,856-28,678,237 | - | C1H4g19231 | CX4g035476 | LOC_Os04g55810 | Os04g0652500 | - | Detail |
| C2H4g13053 | 4:28,679,430-28,685,604 | + | C1H4g21279 | CX4g034733 | LOC_Os04g55840 | Os04g0652600 | - | Detail |
| C2H4g17182 | 4:28,687,510-28,687,912 | + | C1H4g27223 | CX4g032019 | LOC_Os04g55850 | Os04g0652700 | - | Detail |
| C2H4g24107 | 4:28,688,902-28,689,950 | + | C1H4g01148 | CX4g034882 | LOC_Os04g55850 | Os04g0652700 | - | Detail |
| C2H4g15013 | 4:28,691,427-28,693,560 | - | C1H4g09382 | CX4g035227 | LOC_Os04g55860 | Os04g0652900 | - | Detail |
| C2H4g11780 | 4:28,711,259-28,715,440 | + | C1H4g27108 | CX4g034020 | LOC_Os04g55920 | Os04g0653000 | EG2, OsTIFY3, OsJAZ10, OsJAZ 1, OsJAZ1, EG2/OsJAZ1, JAZ1/EG2 | Detail |
| C2H4g28993 | 4:28,715,507-28,717,713 | - | C1H4g20973 | CX4g036062 | LOC_Os04g55930 | Os04g0653100 | - | Detail |
| C2H4g12547 | 4:28,719,040-28,723,511 | + | C1H4g27383 | CX4g034519 | LOC_Os04g55940 | Os04g0653200 | OsCAX3 | Detail |
| C2H4g01169 | 4:28,729,714-28,730,357 | + | C1H4g14097 | - | LOC_Os04g55950 | Os04g0653300 | - | Detail |
| C2H4g18627 | 4:28,734,367-28,740,420 | + | C1H4g13362 | CX4g033116 | LOC_Os04g55960 | Os04g0653400 | - | Detail |
| C2H4g04898 | 4:28,749,350-28,753,245 | + | C1H4g12359 | CX4g031647 | LOC_Os04g55970 | Os04g0653600 | - | Detail |
| C2H4g22789 | 4:28,755,631-28,755,891 | - | - | CX4g034121 | LOC_Os04g56010 | - | - | Detail |
| C2H4g03477 | 4:28,757,268-28,757,591 | - | - | CX4g034121 | LOC_Os04g56010 | - | - | Detail |
| C2H4g01694 | 4:28,759,668-28,760,728 | - | C1H4g06436 | CX4g035335 | LOC_Os04g56030 | Os04g0654400 | - | Detail |
| C2H4g03782 | 4:28,762,415-28,763,011 | - | - | - | - | - | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |