| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H4g15337 | 4:2,989,404-2,990,624 | - | C2H4g06548 | CX4g035400 | LOC_Os04g07830 | Os04g0160600 | - | Detail |
| C1H4g12963 | 4:3,035,202-3,037,424 | + | C2H4g27562 | CX4g033885 | LOC_Os04g07890 | Os04g0161100 | - | Detail |
| C1H4g07373 | 4:3,044,478-3,046,000 | + | C2H4g26223 | CX4g033924 | LOC_Os04g07920 | Os04g0161400 | - | Detail |
| C1H4g07816 | 4:3,050,056-3,050,562 | + | - | CX4g033208 | LOC_Os04g07930 | - | - | Detail |
| C1H4g24705 | 4:3,078,723-3,078,983 | + | - | - | - | - | - | Detail |
| C1H4g19033 | 4:3,092,889-3,108,684 | + | C2H4g10368 | CX4g034915 | LOC_Os04g08034 | Os04g0162100 | - | Detail |
| C1H4g24860 | 4:3,114,200-3,115,455 | - | C2H4g30421 | - | - | - | - | Detail |
| C1H4g29541 | 4:3,114,306-3,115,346 | + | C2H4g24447 | CX4g032410 | LOC_Os04g08060 | Os04g0162500 | - | Detail |
| C1H4g24154 | 4:3,123,935-3,124,225 | + | C2H4g00154 | CX4g031783 | - | - | - | Detail |
| C1H4g13417 | 4:3,129,489-3,130,697 | - | C2H4g09598 | CX4g031910 | LOC_Os04g08070 | Os04g0162600 | - | Detail |
| C1H4g29100 | 4:3,141,020-3,142,960 | + | C2H4g27755 | CX4g031878 | LOC_Os04g08080 | Os04g0162800 | - | Detail |
| C1H4g17619 | 4:3,143,047-3,143,274 | + | C2H4g27755 | CX4g031878 | LOC_Os04g08080 | Os04g0162800 | - | Detail |
| C1H4g24485 | 4:3,149,535-3,150,746 | - | C2H4g09598 | CX4g031910 | LOC_Os04g08070 | Os04g0162600 | - | Detail |
| C1H4g00901 | 4:3,163,608-3,164,791 | + | C2H4g18612 | - | LOC_Os04g08180 | - | - | Detail |
| C1H4g25842 | 4:3,167,124-3,170,776 | + | C2H4g29845 | CX4g033256 | LOC_Os04g08190 | Os04g0163800 | - | Detail |
| C1H4g09408 | 4:3,167,301-3,167,720 | - | C2H4g24428 | CX4g033304 | - | Os04g0155750 | - | Detail |
| C1H4g05235 | 4:3,174,722-3,176,929 | - | C2H4g27755 | CX4g032360 | LOC_Os04g08200 | Os04g0162800 | - | Detail |
| C1H4g02074 | 4:3,189,244-3,190,563 | - | C2H4g09598 | CX4g031910 | LOC_Os04g08250 | Os04g0164701 | - | Detail |
| C1H4g06415 | 4:3,193,333-3,206,423 | + | C2H4g26409 | CX4g034642 | - | Os04g0164900 | - | Detail |
| C1H4g23865 | 4:3,208,108-3,209,701 | - | C2H4g26447 | CX4g033506 | - | Os04g0165000 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H7g17621 | 7:1,317,257-1,318,202 | + | C1H7g25238 | CX7g046883 | - | - | - | Detail |
| C2H7g12471 | 7:1,319,741-1,320,250 | + | C1H7g03279 | CX7g046883 | LOC_Os07g03288 | Os07g0126401 | - | Detail |
| C2H7g06062 | 7:1,323,313-1,323,831 | + | C1H7g21567 | CX7g046883 | LOC_Os07g03319 | Os07g0125201 | - | Detail |
| C2H7g12596 | 7:1,325,430-1,325,957 | + | C1H7g06276 | CX7g046883 | LOC_Os07g03600 | Os07g0127700 | - | Detail |
| C2H7g00385 | 7:1,330,158-1,330,667 | + | C1H7g27056 | CX7g046883 | LOC_Os07g03610 | Os07g0127900 | - | Detail |
| C2H7g14288 | 7:1,333,441-1,333,956 | + | C1H7g27056 | CX7g046883 | LOC_Os07g03620 | Os07g0127900 | - | Detail |
| C2H7g25556 | 7:1,336,239-1,336,760 | + | C1H7g27056 | CX7g046883 | LOC_Os07g03620 | Os07g0127900 | - | Detail |
| C2H7g09311 | 7:1,344,372-1,344,617 | - | - | CX2g021818 | - | - | - | Detail |
| C2H7g12708 | 7:1,344,825-1,349,169 | + | C1H2g04979 | CX7g049690 | - | - | - | Detail |
| C2H7g20797 | 7:1,365,749-1,366,294 | + | C1H7g00732 | CX7g046883 | LOC_Os07g03680 | Os07g0127700 | - | Detail |
| C2H7g30099 | 7:1,369,169-1,369,687 | + | C1H7g07379 | CX7g046883 | LOC_Os07g03690 | Os07g0128800 | - | Detail |
| C2H7g02005 | 7:1,376,734-1,377,240 | + | C1H7g03279 | CX7g046883 | LOC_Os07g03710 | Os07g0129200 | PR1A, OsPR1a, OsPR-1a, PR1a, OsPR1#074, OsPR1-74, PR-1a, OsSCP, SCP | Detail |
| C2H7g27869 | 7:1,382,172-1,382,672 | + | C1H7g03279 | CX7g046883 | LOC_Os07g03730 | Os07g0129300 | OsPR1aL | Detail |
| C2H7g30381 | 7:1,386,469-1,386,984 | + | C1H7g07379 | CX7g046883 | LOC_Os07g03750 | Os07g0127700 | - | Detail |
| C2H7g21640 | 7:1,388,204-1,390,685 | - | C1H7g25003 | CX7g049764 | LOC_Os07g03760 | - | - | Detail |
| C2H7g07364 | 7:1,418,866-1,424,814 | + | C1H7g21106 | CX7g047059 | LOC_Os07g03770 | Os07g0129700 | OSH15, Oskn3 | Detail |
| C2H7g12349 | 7:1,435,325-1,437,829 | - | C1H7g23406 | - | LOC_Os07g03780 | Os07g0129800 | - | Detail |
| C2H7g17374 | 7:1,440,804-1,442,726 | - | C1H7g13341 | - | LOC_Os07g03790 | Os07g0129900 | - | Detail |
| C2H7g09208 | 7:1,445,267-1,446,277 | + | C1H7g01046 | - | LOC_Os07g02770 | Os07g0130000 | - | Detail |
| C2H7g09142 | 7:1,447,373-1,448,693 | - | - | - | - | - | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |