| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g16330 | 3:33,552,540-33,557,647 | + | C2H3g08868 | CX3g030691 | LOC_Os03g64250 | Os03g0860000 | - | Detail |
| C1H3g08606 | 3:33,565,584-33,581,864 | - | C2H3g04480 | CX3g027910 | LOC_Os03g64290 | Os03g0860700 | - | Detail |
| C1H3g27781 | 3:33,586,510-33,592,811 | + | C2H3g22239 | CX3g029996 | LOC_Os03g64300 | Os03g0860900 | - | Detail |
| C1H3g04412 | 3:33,593,879-33,604,834 | + | C2H3g11459 | CX3g027284 | LOC_Os03g64320 | Os03g0861100 | - | Detail |
| C1H3g04119 | 3:33,612,242-33,613,617 | - | C2H3g16452 | CX3g031284 | LOC_Os03g64340 | Os03g0861400 | - | Detail |
| C1H3g17429 | 3:33,619,949-33,625,103 | - | C2H3g12472 | CX3g030656 | LOC_Os03g64350 | Os03g0861700 | - | Detail |
| C1H3g24824 | 3:33,625,267-33,628,020 | + | C2H3g08959 | CX3g028909 | LOC_Os03g64360 | Os03g0861800 | - | Detail |
| C1H3g08341 | 3:33,638,279-33,645,157 | + | C2H3g16629 | CX3g029193 | LOC_Os03g64400 | Os03g0862100 | - | Detail |
| C1H4g00861 | 4:16,416-19,947 | + | C2H4g13233 | CX4g032894 | LOC_Os04g01070 | Os04g0100300 | - | Detail |
| C1H4g16035 | 4:16,510-18,252 | - | C2H4g12191 | - | - | - | - | Detail |
| C1H4g09455 | 4:39,781-40,005 | - | C2H12g12031 | CX4g034444 | LOC_Os02g17030 | - | - | Detail |
| C1H4g03520 | 4:42,032-50,044 | + | C2H4g17137 | CX4g036339 | LOC_Os08g33280 | - | - | Detail |
| C1H4g00970 | 4:97,742-106,695 | + | C2H4g05647 | CX4g034809 | LOC_Os04g01130 | Os04g0101300 | - | Detail |
| C1H4g04170 | 4:108,701-110,550 | - | C2H4g16448 | CX4g034027 | LOC_Os04g01140 | Os04g0101400 | CYP93G1, OsCYP93G1, OsFNSII, FNSII | Detail |
| C1H4g21331 | 4:124,561-127,342 | + | C2H4g17331 | CX4g033419 | LOC_Os04g01150 | Os04g0101700 | - | Detail |
| C1H4g00085 | 4:129,761-132,613 | - | C2H4g10066 | CX4g031572 | LOC_Os04g01160 | Os04g0101800 | SOR1 | Detail |
| C1H4g29729 | 4:176,858-177,094 | + | C2H4g10312 | - | - | - | - | Detail |
| C1H4g11244 | 4:177,315-182,878 | + | C2H4g18592 | CX4g036467 | LOC_Os04g01230 | Os04g0102500 | - | Detail |
| C1H4g30914 | 4:183,184-187,055 | - | C2H4g15768 | CX4g033514 | LOC_Os04g01240 | Os04g0102600 | - | Detail |
| C1H4g22444 | 4:188,075-197,428 | - | C2H4g26141 | CX4g035629 | LOC_Os04g01250 | Os04g0102700 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H3g07169 | 3:24,930,452-24,931,840 | + | C1H3g01296 | CX3g029210 | LOC_Os03g47860 | Os03g0682900 | OsACT | Detail |
| C2H3g13971 | 3:24,930,577-24,934,598 | - | - | CX3g025680 | - | Os03g0682822 | - | Detail |
| C2H3g28221 | 3:24,938,787-24,939,560 | - | C1H3g26805 | CX3g030162 | LOC_Os03g47890 | Os03g0683200 | - | Detail |
| C2H3g09855 | 3:24,943,523-24,944,401 | - | C1H3g30362 | CX3g027958 | LOC_Os03g47896 | Os03g0683300 | - | Detail |
| C2H3g01457 | 3:24,947,155-24,965,254 | - | C1H3g01955 | - | LOC_Os03g47920 | Os03g0683816 | - | Detail |
| C2H3g15375 | 3:24,948,114-24,960,575 | + | C1H3g30757 | CX3g026415 | LOC_Os03g47930 | Os03g0138600 | - | Detail |
| C2H3g26490 | 3:24,961,781-24,966,092 | + | C1H3g31733 | CX3g030593 | LOC_Os03g47940 | Os03g0683800 | - | Detail |
| C2H3g09499 | 3:24,967,921-24,985,421 | - | C1H3g20424 | CX3g028427 | LOC_Os03g47949 | Os03g0683900 | - | Detail |
| C2H3g10030 | 3:24,987,577-24,993,187 | - | C1H3g09827 | CX3g029806 | LOC_Os03g47980 | Os03g0684100 | - | Detail |
| C2H3g27014 | 3:24,994,119-24,996,866 | + | C1H3g13222 | CX3g027899 | LOC_Os03g47990 | Os03g0684300 | - | Detail |
| C2H3g26230 | 3:24,999,027-25,005,037 | + | C1H3g18256 | CX3g029805 | LOC_Os03g48000 | Os03g0684400 | OsMGT3 | Detail |
| C2H3g13044 | 3:25,007,615-25,010,224 | + | C1H3g27366 | CX3g027834 | LOC_Os03g48010 | Os03g0684500 | - | Detail |
| C2H3g22552 | 3:25,010,928-25,012,812 | - | C1H3g15233 | CX3g025275 | LOC_Os03g48030 | Os03g0684700 | - | Detail |
| C2H3g24042 | 3:25,016,778-25,019,511 | + | C1H3g05365 | CX3g030044 | LOC_Os03g48040 | Os03g0685000 | OsFdC2, OsHDY1 | Detail |
| C2H3g04933 | 3:25,021,450-25,023,953 | + | C1H3g13814 | CX3g026303 | LOC_Os03g48050 | Os03g0685100 | - | Detail |
| C2H3g28672 | 3:25,039,817-25,040,380 | + | - | - | - | - | - | Detail |
| C2H3g27897 | 3:25,042,457-25,045,714 | + | C1H3g01967 | CX3g027858 | LOC_Os03g48060 | Os03g0685300 | FLO19 | Detail |
| C2H3g26335 | 3:25,051,524-25,055,249 | - | C1H3g16679 | CX3g028901 | LOC_Os03g48080 | Os03g0685500 | - | Detail |
| C2H3g24853 | 3:25,055,827-25,059,882 | - | C1H3g01229 | CX3g029151 | LOC_Os03g48090 | Os03g0685600 | - | Detail |
| C2H3g18835 | 3:25,059,905-25,060,524 | - | C1H3g02003 | - | - | - | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |