| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g14280 | 3:33,371,373-33,372,488 | + | C2H3g28127 | CX3g029132 | LOC_Os03g63850 | Os03g0855500 | - | Detail |
| C1H3g01539 | 3:33,373,239-33,376,666 | + | C2H3g23266 | CX3g027978 | LOC_Os03g63860 | Os03g0855600 | - | Detail |
| C1H3g10625 | 3:33,384,084-33,385,187 | + | C2H3g09898 | CX3g027688 | LOC_Os03g63900 | Os03g0856000 | - | Detail |
| C1H3g25641 | 3:33,389,020-33,391,137 | + | C2H3g04375 | CX3g031335 | LOC_Os03g63910 | Os03g0856100 | - | Detail |
| C1H3g17906 | 3:33,391,850-33,400,353 | + | - | CX3g030971 | LOC_Os03g63920 | Os03g0856200 | OsKu80 | Detail |
| C1H3g22746 | 3:33,400,650-33,402,681 | - | C2H3g28643 | CX3g030579 | LOC_Os03g63930 | Os03g0856300 | - | Detail |
| C1H3g30692 | 3:33,405,209-33,415,067 | + | C2H3g16257 | CX3g028093 | LOC_Os03g63940 | Os03g0856400 | - | Detail |
| C1H3g20639 | 3:33,442,420-33,445,049 | - | C2H3g11890 | CX3g029621 | LOC_Os03g64020 | Os03g0857400 | - | Detail |
| C1H3g22114 | 3:33,446,685-33,448,229 | - | C2H3g15877 | CX3g025931 | LOC_Os03g64030 | Os03g0857500 | - | Detail |
| C1H3g29403 | 3:33,464,995-33,475,412 | - | C2H3g02920 | CX3g027831 | LOC_Os03g64080 | Os03g0858100 | - | Detail |
| C1H3g01357 | 3:33,477,017-33,477,436 | - | C2H3g25733 | CX3g026648 | LOC_Os03g64100 | Os03g0858200 | - | Detail |
| C1H3g08857 | 3:33,481,213-33,485,480 | + | C2H3g02150 | CX3g030847 | LOC_Os03g64110 | Os03g0858400 | - | Detail |
| C1H3g16247 | 3:33,494,539-33,496,100 | - | C2H3g17790 | CX3g029022 | LOC_Os03g64140 | Os03g0858700 | - | Detail |
| C1H3g22606 | 3:33,510,675-33,511,508 | - | C2H3g13548 | CX3g029038 | LOC_Os03g64170 | Os03g0859100 | - | Detail |
| C1H3g08104 | 3:33,512,368-33,513,602 | - | C2H3g20836 | CX3g029038 | LOC_Os03g64170 | Os03g0859100 | - | Detail |
| C1H3g07086 | 3:33,520,116-33,526,348 | - | C2H3g16125 | CX3g031056 | LOC_Os03g64190 | Os03g0859300 | - | Detail |
| C1H3g08038 | 3:33,528,463-33,533,573 | - | C2H3g24116 | CX3g029460 | LOC_Os03g64200 | Os03g0859500 | - | Detail |
| C1H3g08107 | 3:33,536,438-33,539,902 | - | C2H3g24534 | CX3g028741 | LOC_Os03g64210 | Os03g0859600 | - | Detail |
| C1H3g16052 | 3:33,542,137-33,544,808 | - | C2H3g16421 | CX3g027116 | LOC_Os03g64219 | Os03g0859800 | - | Detail |
| C1H3g15087 | 3:33,549,229-33,552,069 | + | C2H3g04803 | CX3g027684 | LOC_Os03g64230 | Os03g0859900 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H5g28105 | 5:24,111,796-24,112,707 | - | C1H5g30015 | CX5g037651 | LOC_Os05g50160 | Os05g0577100 | - | Detail |
| C2H5g16560 | 5:24,119,207-24,123,823 | - | C1H5g15586 | CX5g040119 | LOC_Os05g50170 | Os05g0577200 | - | Detail |
| C2H5g18251 | 5:24,125,998-24,126,519 | - | C1H5g18973 | CX5g040982 | LOC_Os05g50180 | Os05g0577500 | - | Detail |
| C2H5g07752 | 5:24,128,176-24,141,377 | - | C1H5g14939 | CX5g037985 | LOC_Os05g50200 | Os05g0577800 | - | Detail |
| C2H5g09946 | 5:24,142,380-24,146,743 | - | C1H5g25502 | CX5g040371 | LOC_Os05g50210 | Os05g0577900 | - | Detail |
| C2H5g10460 | 5:24,147,354-24,149,591 | + | C1H5g03913 | CX5g036982 | LOC_Os05g50220 | Os05g0578000 | - | Detail |
| C2H5g03748 | 5:24,153,325-24,154,242 | - | C1H5g20150 | CX5g037412 | LOC_Os05g50230 | Os05g0578100 | - | Detail |
| C2H5g13618 | 5:24,162,476-24,167,600 | + | C1H5g22642 | CX5g040349 | LOC_Os05g50250 | Os05g0578500 | - | Detail |
| C2H5g26536 | 5:24,167,680-24,168,015 | + | C1H5g05740 | CX5g040349 | LOC_Os05g50250 | Os05g0578500 | - | Detail |
| C2H5g20774 | 5:24,169,397-24,170,344 | - | C1H5g30673 | CX5g039172 | LOC_Os05g50260 | Os05g0578600 | - | Detail |
| C2H5g28332 | 5:24,174,131-24,177,534 | - | C1H5g30673 | CX5g039590 | LOC_Os05g50260 | Os05g0578600 | - | Detail |
| C2H5g01414 | 5:24,178,489-24,179,683 | + | C1H5g18644 | CX5g038128 | - | - | - | Detail |
| C2H5g06442 | 5:24,180,855-24,181,193 | + | - | - | - | - | - | Detail |
| C2H5g24268 | 5:24,188,936-24,189,860 | + | C1H5g30824 | CX5g037556 | LOC_Os05g50270 | Os05g0578900 | NL1, nl1, OsGATA15, SNFL1 | Detail |
| C2H5g28493 | 5:24,190,618-24,195,475 | - | C1H5g28939 | CX5g037802 | LOC_Os05g50280 | Os05g0579000 | OsERD5 | Detail |
| C2H5g09709 | 5:24,202,249-24,203,250 | + | C1H5g17437 | CX5g037992 | LOC_Os05g50290 | Os05g0579100 | - | Detail |
| C2H5g24355 | 5:24,205,657-24,207,606 | + | C1H5g00625 | CX5g039421 | LOC_Os05g50300 | Os05g0579200 | - | Detail |
| C2H5g30078 | 5:24,210,212-24,210,937 | + | C1H5g28773 | CX5g038909 | LOC_Os05g50310 | Os05g0579300 | - | Detail |
| C2H5g20837 | 5:24,220,960-24,221,858 | - | C1H8g13275 | CX5g038520 | - | - | - | Detail |
| C2H5g16972 | 5:24,223,244-24,223,831 | - | C1H5g25217 | CX5g037463 | LOC_Os05g50340 | Os05g0579600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |