| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g05161 | 3:32,462,973-32,463,324 | - | C2H3g03602 | CX3g025854 | LOC_Os03g61480 | Os03g0830300 | - | Detail |
| C1H3g23073 | 3:32,464,729-32,465,088 | - | C2H3g26647 | CX3g025854 | LOC_Os03g61500 | Os03g0830400 | - | Detail |
| C1H3g28428 | 3:32,471,012-32,471,365 | - | C2H3g22051 | CX3g025854 | LOC_Os03g61500 | Os03g0830500 | OsFWL7 | Detail |
| C1H3g03284 | 3:32,479,311-32,484,499 | - | C2H3g06697 | CX3g029618 | LOC_Os03g61540 | Os03g0830800 | OsPMEI16 | Detail |
| C1H3g14942 | 3:32,488,802-32,490,003 | + | C2H3g08869 | CX3g028759 | LOC_Os03g61550 | Os03g0831000 | - | Detail |
| C1H3g25915 | 3:32,490,331-32,495,702 | - | C2H3g09913 | CX3g026737 | LOC_Os03g61560 | Os03g0831100 | - | Detail |
| C1H3g22820 | 3:32,497,152-32,498,558 | + | C2H3g11440 | CX3g028619 | LOC_Os03g61570 | Os03g0831200 | GATA12 | Detail |
| C1H3g04867 | 3:32,502,407-32,505,917 | + | C2H3g03666 | CX3g030545 | LOC_Os03g61580 | Os03g0831300 | - | Detail |
| C1H3g13504 | 3:32,507,886-32,510,699 | - | C2H3g16374 | CX3g025247 | LOC_Os03g61600 | Os03g0831500 | - | Detail |
| C1H3g30710 | 3:32,514,779-32,519,904 | + | C2H3g08612 | CX3g028872 | LOC_Os03g61620 | Os03g0831700 | - | Detail |
| C1H3g03342 | 3:32,523,766-32,526,460 | + | C2H3g04007 | CX3g029624 | LOC_Os03g61640 | Os03g0831900 | - | Detail |
| C1H3g08775 | 3:32,528,784-32,534,369 | - | C2H3g28205 | CX3g030396 | LOC_Os03g61670 | Os03g0832200 | - | Detail |
| C1H3g25935 | 3:32,535,461-32,537,507 | - | C2H3g20887 | CX3g026430 | LOC_Os03g61680 | Os03g0832300 | OsHYPK | Detail |
| C1H3g22485 | 3:32,539,216-32,542,384 | + | C2H3g17533 | CX3g027599 | LOC_Os03g61690 | Os03g0832400 | - | Detail |
| C1H3g22237 | 3:32,543,281-32,549,240 | + | C2H3g11405 | CX3g027296 | LOC_Os03g61700 | Os03g0832500 | - | Detail |
| C1H3g29450 | 3:32,551,532-32,557,103 | + | C2H3g29424 | CX3g030961 | LOC_Os03g61710 | Os03g0832600 | - | Detail |
| C1H3g27675 | 3:32,562,107-32,567,936 | + | C2H3g26714 | CX3g025285 | LOC_Os03g61720 | Os03g0832800 | - | Detail |
| C1H3g02566 | 3:32,567,906-32,573,932 | - | C2H3g23309 | CX3g026066 | LOC_Os03g61730 | Os03g0832900 | - | Detail |
| C1H3g17390 | 3:32,579,018-32,579,979 | + | C2H3g29006 | CX3g030723 | LOC_Os03g61740 | Os03g0833100 | - | Detail |
| C1H3g15949 | 3:32,580,744-32,583,653 | + | C2H3g14240 | CX3g025091 | LOC_Os03g61750 | Os03g0833200 | OsTRM13, OsTrm13 | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H3g08146 | 3:25,060,344-25,073,286 | + | C1H3g30763 | CX3g027759 | - | - | - | Detail |
| C2H3g06193 | 3:25,080,310-25,093,249 | - | C1H3g31689 | CX3g025545 | LOC_Os03g48140 | Os03g0686300 | - | Detail |
| C2H3g15650 | 3:25,099,612-25,102,820 | + | C1H3g17077 | CX3g025241 | LOC_Os03g48160 | Os03g0253100 | - | Detail |
| C2H3g12008 | 3:25,104,383-25,108,435 | + | C1H3g31064 | CX3g025276 | LOC_Os03g48170 | Os03g0686900 | FLO6 | Detail |
| C2H3g19404 | 3:25,109,095-25,114,669 | - | C1H3g04074 | CX3g025668 | LOC_Os03g51050 | Os03g0687000 | OsNPF2.4, NPF2.4, OsPTR2, PTR2 | Detail |
| C2H3g17935 | 3:25,127,611-25,131,595 | - | C1H3g27780 | CX3g029198 | LOC_Os03g48190 | Os03g0687200 | - | Detail |
| C2H3g12687 | 3:25,135,284-25,136,030 | - | C1H3g26805 | CX3g025750 | LOC_Os03g48200 | Os03g0687400 | - | Detail |
| C2H3g13078 | 3:25,137,917-25,138,663 | - | C1H3g31647 | CX3g029222 | LOC_Os03g48220 | Os03g0687700 | - | Detail |
| C2H3g02466 | 3:25,140,936-25,141,493 | - | C1H3g02479 | CX3g025750 | LOC_Os03g48225 | Os03g0687800 | - | Detail |
| C2H3g05793 | 3:25,142,535-25,143,269 | - | C1H3g12014 | CX3g028579 | LOC_Os03g48235 | Os03g0688000 | - | Detail |
| C2H3g06136 | 3:25,144,788-25,145,247 | - | C1H3g12256 | CX3g029222 | LOC_Os03g48220 | Os03g0687700 | - | Detail |
| C2H3g19874 | 3:25,146,922-25,151,844 | + | C1H3g24497 | CX3g029090 | LOC_Os03g48260 | Os03g0688200 | - | Detail |
| C2H3g05160 | 3:25,157,608-25,163,002 | + | C1H3g21570 | CX3g025253 | LOC_Os03g48270 | Os03g0688300 | CDPK9, OsCDPK9, OsCPK9 | Detail |
| C2H3g19979 | 3:25,186,796-25,214,847 | + | C1H3g15303 | CX3g027485 | LOC_Os03g48300 | Os03g0689100 | - | Detail |
| C2H3g24844 | 3:25,222,977-25,230,070 | + | C1H3g28879 | CX3g027452 | LOC_Os03g48310 | Os03g0689300 | - | Detail |
| C2H3g06110 | 3:25,231,632-25,235,399 | - | C1H3g09435 | CX3g026383 | LOC_Os03g48380 | Os03g0689900 | - | Detail |
| C2H3g14932 | 3:25,237,216-25,239,557 | + | C1H3g04287 | CX3g027552 | LOC_Os03g48390 | Os03g0690000 | - | Detail |
| C2H3g03020 | 3:25,282,883-25,286,063 | - | C1H3g28354 | CX3g028707 | LOC_Os03g48450 | Os03g0690600 | - | Detail |
| C2H3g18585 | 3:25,290,921-25,294,737 | + | C1H3g15398 | - | LOC_Os03g48471 | Os03g0690700 | - | Detail |
| C2H3g25812 | 3:25,324,182-25,326,537 | - | C1H3g11606 | CX3g027625 | LOC_Os03g48480 | Os03g0691400 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |