| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g05161 | 3:32,462,973-32,463,324 | - | C2H3g03602 | CX3g025854 | LOC_Os03g61480 | Os03g0830300 | - | Detail |
| C1H3g23073 | 3:32,464,729-32,465,088 | - | C2H3g26647 | CX3g025854 | LOC_Os03g61500 | Os03g0830400 | - | Detail |
| C1H3g28428 | 3:32,471,012-32,471,365 | - | C2H3g22051 | CX3g025854 | LOC_Os03g61500 | Os03g0830500 | OsFWL7 | Detail |
| C1H3g03284 | 3:32,479,311-32,484,499 | - | C2H3g06697 | CX3g029618 | LOC_Os03g61540 | Os03g0830800 | OsPMEI16 | Detail |
| C1H3g14942 | 3:32,488,802-32,490,003 | + | C2H3g08869 | CX3g028759 | LOC_Os03g61550 | Os03g0831000 | - | Detail |
| C1H3g25915 | 3:32,490,331-32,495,702 | - | C2H3g09913 | CX3g026737 | LOC_Os03g61560 | Os03g0831100 | - | Detail |
| C1H3g22820 | 3:32,497,152-32,498,558 | + | C2H3g11440 | CX3g028619 | LOC_Os03g61570 | Os03g0831200 | GATA12 | Detail |
| C1H3g04867 | 3:32,502,407-32,505,917 | + | C2H3g03666 | CX3g030545 | LOC_Os03g61580 | Os03g0831300 | - | Detail |
| C1H3g13504 | 3:32,507,886-32,510,699 | - | C2H3g16374 | CX3g025247 | LOC_Os03g61600 | Os03g0831500 | - | Detail |
| C1H3g30710 | 3:32,514,779-32,519,904 | + | C2H3g08612 | CX3g028872 | LOC_Os03g61620 | Os03g0831700 | - | Detail |
| C1H3g03342 | 3:32,523,766-32,526,460 | + | C2H3g04007 | CX3g029624 | LOC_Os03g61640 | Os03g0831900 | - | Detail |
| C1H3g08775 | 3:32,528,784-32,534,369 | - | C2H3g28205 | CX3g030396 | LOC_Os03g61670 | Os03g0832200 | - | Detail |
| C1H3g25935 | 3:32,535,461-32,537,507 | - | C2H3g20887 | CX3g026430 | LOC_Os03g61680 | Os03g0832300 | OsHYPK | Detail |
| C1H3g22485 | 3:32,539,216-32,542,384 | + | C2H3g17533 | CX3g027599 | LOC_Os03g61690 | Os03g0832400 | - | Detail |
| C1H3g22237 | 3:32,543,281-32,549,240 | + | C2H3g11405 | CX3g027296 | LOC_Os03g61700 | Os03g0832500 | - | Detail |
| C1H3g29450 | 3:32,551,532-32,557,103 | + | C2H3g29424 | CX3g030961 | LOC_Os03g61710 | Os03g0832600 | - | Detail |
| C1H3g27675 | 3:32,562,107-32,567,936 | + | C2H3g26714 | CX3g025285 | LOC_Os03g61720 | Os03g0832800 | - | Detail |
| C1H3g02566 | 3:32,567,906-32,573,932 | - | C2H3g23309 | CX3g026066 | LOC_Os03g61730 | Os03g0832900 | - | Detail |
| C1H3g17390 | 3:32,579,018-32,579,979 | + | C2H3g29006 | CX3g030723 | LOC_Os03g61740 | Os03g0833100 | - | Detail |
| C1H3g15949 | 3:32,580,744-32,583,653 | + | C2H3g14240 | CX3g025091 | LOC_Os03g61750 | Os03g0833200 | OsTRM13, OsTrm13 | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H3g00076 | 3:8,821,643-8,824,285 | + | C1H3g16506 | CX3g029623 | LOC_Os03g17990 | Os03g0289200 | - | Detail |
| C2H3g12597 | 3:8,827,655-8,831,012 | + | C1H3g21351 | CX3g025090 | LOC_Os03g18010 | Os03g0289300 | - | Detail |
| C2H3g05021 | 3:8,831,918-8,833,281 | + | C1H3g12635 | CX3g029991 | LOC_Os03g18020 | Os03g0289400 | - | Detail |
| C2H3g09473 | 3:8,839,795-8,844,816 | - | C1H3g24871 | CX3g030981 | LOC_Os03g18030 | Os03g0289800 | OsLDOX2 | Detail |
| C2H3g08584 | 3:8,867,101-8,870,248 | - | C1H3g18241 | CX3g025852 | LOC_Os03g18070 | Os03g0290300 | OsFAD7 | Detail |
| C2H3g10954 | 3:8,876,151-8,877,043 | - | C1H3g19780 | - | - | Os03g0290400 | - | Detail |
| C2H3g13012 | 3:8,877,967-8,885,760 | - | C1H3g18917 | CX3g025324 | LOC_Os03g18080 | Os03g0290500 | - | Detail |
| C2H3g23225 | 3:8,891,979-8,893,790 | + | C1H3g30153 | CX3g026472 | LOC_Os03g18110 | Os03g0290900 | - | Detail |
| C2H3g10304 | 3:8,902,619-8,906,132 | + | C1H3g18009 | CX3g026408 | LOC_Os03g18120 | Os03g0291200 | - | Detail |
| C2H3g15096 | 3:8,906,050-8,910,344 | - | C1H3g24409 | CX3g030158 | LOC_Os03g18130 | Os03g0291500 | ASN1, OsASN1, OsAS1, AS1 | Detail |
| C2H3g11917 | 3:8,933,332-8,938,306 | + | C1H3g22391 | CX3g029744 | LOC_Os03g18140 | Os03g0291800 | - | Detail |
| C2H3g26678 | 3:8,946,414-8,948,421 | + | C1H3g05911 | CX3g026643 | LOC_Os03g18150 | Os03g0292100 | - | Detail |
| C2H3g20112 | 3:8,957,779-8,960,090 | + | C1H3g07369 | CX3g027477 | LOC_Os03g18160 | Os03g0292200 | - | Detail |
| C2H3g05672 | 3:8,970,630-8,972,015 | + | C1H3g17889 | CX3g030839 | LOC_Os03g18170 | Os03g0292700 | - | Detail |
| C2H3g30223 | 3:8,974,461-8,976,844 | - | C1H3g01237 | CX3g025459 | LOC_Os03g18180 | Os03g0292800 | - | Detail |
| C2H3g08063 | 3:8,977,738-8,978,617 | + | C1H3g01195 | CX3g030714 | - | Os03g0727600 | ACS1, ACC1*, OsACS1, Os-ACS1, ACC1 | Detail |
| C2H3g00182 | 3:8,980,116-8,989,686 | - | C1H3g09425 | CX3g026640 | LOC_Os03g18190 | Os03g0292900 | - | Detail |
| C2H3g24196 | 3:8,992,468-8,997,478 | + | C1H3g30417 | CX3g027666 | LOC_Os03g18200 | Os03g0293000 | - | Detail |
| C2H3g19840 | 3:8,998,182-8,999,327 | + | C1H3g18813 | CX3g029007 | LOC_Os03g18200 | Os03g0293100 | - | Detail |
| C2H3g15900 | 3:9,001,550-9,004,961 | + | C1H3g03257 | CX3g030471 | LOC_Os03g18210 | Os03g0293400 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |