| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g28916 | 3:32,330,949-32,333,549 | + | C2H3g11545 | CX3g025977 | LOC_Os03g61110 | Os03g0826400 | - | Detail |
| C1H3g22562 | 3:32,333,577-32,338,967 | - | C2H3g21893 | CX3g029605 | LOC_Os03g61120 | Os03g0826500 | OASA1 | Detail |
| C1H3g26880 | 3:32,341,186-32,344,123 | + | C2H3g05353 | CX3g025000 | LOC_Os03g61130 | Os03g0826600 | NPC1, OsNPC1 | Detail |
| C1H3g05534 | 3:32,344,665-32,348,011 | - | C2H3g28499 | CX3g028046 | LOC_Os03g61140 | Os03g0826700 | - | Detail |
| C1H3g12263 | 3:32,349,237-32,350,584 | - | C2H3g14501 | CX3g028016 | LOC_Os03g61160 | Os03g0826800 | - | Detail |
| C1H3g01008 | 3:32,354,515-32,355,501 | - | C2H3g13944 | CX3g027714 | LOC_Os03g61160 | Os03g0826900 | - | Detail |
| C1H3g06986 | 3:32,359,899-32,361,709 | + | C2H3g09376 | CX3g026377 | LOC_Os03g61200 | Os03g0827500 | - | Detail |
| C1H3g22721 | 3:32,361,994-32,362,224 | + | C2H3g26774 | CX3g026377 | LOC_Os03g61200 | Os03g0827500 | - | Detail |
| C1H3g20175 | 3:32,363,169-32,366,428 | - | C2H3g01649 | CX3g026728 | LOC_Os03g61210 | Os03g0827600 | - | Detail |
| C1H3g27004 | 3:32,370,185-32,376,561 | + | C2H3g01744 | CX3g028357 | LOC_Os03g61220 | Os03g0827700 | - | Detail |
| C1H3g05040 | 3:32,395,109-32,399,602 | - | C2H3g15439 | CX3g026752 | LOC_Os03g61290 | Os03g0828600 | - | Detail |
| C1H3g03156 | 3:32,401,688-32,405,296 | - | C2H3g19505 | CX3g028380 | LOC_Os03g61280 | Os03g0828500 | - | Detail |
| C1H3g12556 | 3:32,418,074-32,419,704 | - | C2H3g03283 | CX3g030607 | LOC_Os03g61270 | Os03g0828300 | - | Detail |
| C1H3g04822 | 3:32,425,252-32,426,799 | - | C2H3g18546 | CX3g029024 | LOC_Os03g61260 | Os03g0828100 | OsPRPL18 | Detail |
| C1H3g26131 | 3:32,430,487-32,433,116 | - | C2H3g08381 | CX3g026632 | LOC_Os03g61330 | Os03g0829000 | - | Detail |
| C1H3g15915 | 3:32,433,723-32,436,308 | - | C2H3g25590 | CX3g028011 | LOC_Os03g61340 | Os03g0829100 | - | Detail |
| C1H3g03162 | 3:32,437,093-32,440,281 | - | C2H3g24696 | CX3g026642 | LOC_Os03g61360 | Os03g0829200 | - | Detail |
| C1H3g09916 | 3:32,437,941-32,438,489 | + | C2H3g26698 | CX3g030512 | LOC_Os03g64340 | Os03g0829466 | - | Detail |
| C1H3g07645 | 3:32,447,190-32,447,890 | - | C2H3g04636 | CX3g025854 | LOC_Os03g61470 | Os03g0830200 | OsCNR10 | Detail |
| C1H3g25802 | 3:32,451,427-32,451,741 | - | C2H3g26647 | CX3g025854 | LOC_Os03g61500 | Os03g0830400 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H6g23727 | 6:1,154,556-1,156,689 | + | C1H6g21967 | CX6g044602 | LOC_Os06g04080 | Os06g0131500 | - | Detail |
| C2H6g24358 | 6:1,162,866-1,166,381 | - | C1H6g10070 | CX6g041745 | LOC_Os06g04090 | Os06g0131700 | - | Detail |
| C2H6g10300 | 6:1,184,169-1,185,533 | - | - | CX6g042310 | LOC_Os06g04130 | Os06g0132100 | - | Detail |
| C2H6g28984 | 6:1,187,456-1,188,025 | - | C1H6g21299 | CX6g043564 | LOC_Os06g04140 | Os06g0132300 | - | Detail |
| C2H6g09752 | 6:1,188,834-1,189,814 | - | C1H6g21299 | CX6g044687 | LOC_Os06g04150 | Os06g0132400 | YGL18, ChlM | Detail |
| C2H6g08599 | 6:1,191,519-1,197,341 | - | C1H6g23000 | CX6g044041 | LOC_Os06g04169 | Os06g0132500 | OsBDG | Detail |
| C2H6g25055 | 6:1,211,402-1,215,328 | - | C1H6g17422 | CX6g041905 | LOC_Os06g04190 | Os06g0132600 | OsRAD1, RAD1 | Detail |
| C2H6g03148 | 6:1,218,691-1,223,612 | + | C1H6g23540 | CX6g043331 | LOC_Os06g04200 | Os06g0133000 | WX1, wx (Wx(am)), Wx, WX-B, GBSS-I, GBSS, OsGBSSI, GBSS1, OsGBSS1, GBSSI | Detail |
| C2H6g22217 | 6:1,226,616-1,226,912 | + | - | CX6g043924 | LOC_Os06g04210 | Os06g0133200 | - | Detail |
| C2H6g28022 | 6:1,230,375-1,230,659 | + | - | CX6g044984 | LOC_Os06g04220 | Os06g0133300 | - | Detail |
| C2H6g14484 | 6:1,233,911-1,234,174 | + | C1H6g09083 | CX6g042298 | LOC_Os06g04230 | Os06g0133400 | - | Detail |
| C2H6g03555 | 6:1,235,005-1,235,286 | - | C1H6g09083 | CX6g042298 | LOC_Os06g04240 | Os06g0133500 | - | Detail |
| C2H6g25685 | 6:1,241,084-1,242,151 | + | - | CX6g042617 | LOC_Os06g04250 | Os06g0133600 | - | Detail |
| C2H6g05959 | 6:1,257,209-1,259,084 | + | C1H6g07345 | CX6g045091 | LOC_Os06g04470 | Os06g0136100 | - | Detail |
| C2H6g30353 | 6:1,260,546-1,264,031 | - | C1H6g21882 | CX6g044476 | LOC_Os06g04270 | Os06g0133800 | - | Detail |
| C2H6g15004 | 6:1,267,478-1,271,368 | + | C1H6g02027 | CX6g044113 | LOC_Os06g04280 | Os06g0133900 | EPSPS, EPSPs, OsEPSPS | Detail |
| C2H6g06475 | 6:1,271,937-1,273,654 | - | C1H6g14754 | CX6g041350 | LOC_Os06g04290 | Os06g0134000 | - | Detail |
| C2H6g13486 | 6:1,274,602-1,276,735 | - | C1H6g07407 | CX6g045804 | LOC_Os06g04300 | Os06g0134050 | - | Detail |
| C2H6g20989 | 6:1,276,836-1,277,219 | - | C1H6g07407 | CX6g045804 | LOC_Os06g04300 | Os06g0134050 | - | Detail |
| C2H6g29611 | 6:1,286,539-1,288,975 | - | C1H6g30767 | CX6g042141 | LOC_Os06g04330 | Os06g0134300 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |