| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g06740 | 3:32,166,904-32,171,631 | - | C2H3g22473 | CX3g027087 | LOC_Os03g60820 | Os03g0823100 | OsXTPH1 | Detail |
| C1H3g24263 | 3:32,175,777-32,176,271 | - | C2H3g15918 | CX3g030305 | LOC_Os03g60840 | Os03g0823400 | - | Detail |
| C1H3g29645 | 3:32,185,427-32,188,070 | - | C2H3g26506 | CX3g026712 | LOC_Os03g60850 | Os03g0823500 | - | Detail |
| C1H3g11164 | 3:32,202,100-32,204,695 | - | C2H3g00093 | CX3g026664 | LOC_Os03g60870 | Os03g0823700 | - | Detail |
| C1H3g23866 | 3:32,206,308-32,210,030 | - | C2H3g02263 | CX3g027221 | LOC_Os03g60880 | Os03g0823800 | - | Detail |
| C1H3g01074 | 3:32,212,281-32,214,547 | - | C2H3g09474 | CX3g030885 | LOC_Os03g60890 | Os03g0436300 | - | Detail |
| C1H3g20395 | 3:32,218,093-32,222,499 | - | C2H3g11643 | CX3g028969 | LOC_Os03g60910 | Os03g0824100 | OspTAC2 | Detail |
| C1H3g15763 | 3:32,222,841-32,224,671 | + | C2H3g24839 | CX3g029964 | LOC_Os03g60920 | Os03g0824200 | - | Detail |
| C1H3g22993 | 3:32,225,722-32,233,431 | + | C2H3g29813 | CX3g026240 | LOC_Os03g60930 | Os03g0824300 | - | Detail |
| C1H3g30240 | 3:32,233,668-32,236,124 | + | C2H3g08790 | CX3g029491 | LOC_Os03g60939 | Os03g0824400 | - | Detail |
| C1H3g23681 | 3:32,236,750-32,238,086 | - | C2H3g23783 | - | LOC_Os03g60950 | Os03g0824500 | - | Detail |
| C1H3g14797 | 3:32,240,078-32,241,582 | + | C2H3g29419 | CX3g026521 | LOC_Os03g60960 | Os03g0824600 | - | Detail |
| C1H3g07336 | 3:32,257,725-32,258,426 | - | C2H3g22835 | CX3g028951 | LOC_Os03g60992 | - | - | Detail |
| C1H3g10094 | 3:32,275,478-32,280,455 | + | C2H3g07063 | CX3g028028 | LOC_Os03g61010 | Os03g0825300 | - | Detail |
| C1H3g04477 | 3:32,281,464-32,283,107 | - | C2H3g11868 | CX3g028738 | LOC_Os03g61019 | Os03g0825400 | - | Detail |
| C1H3g13397 | 3:32,283,533-32,285,395 | + | C2H3g12188 | CX3g026510 | LOC_Os03g61030 | Os03g0825500 | - | Detail |
| C1H3g30577 | 3:32,294,739-32,302,753 | + | C2H3g22286 | CX3g031039 | LOC_Os03g61050 | Os03g0825700 | Os DEX1, OsDEX1 | Detail |
| C1H3g02346 | 3:32,302,927-32,305,436 | - | C2H3g05833 | CX3g027996 | LOC_Os03g61060 | Os03g0825800 | - | Detail |
| C1H3g07590 | 3:32,318,679-32,323,344 | - | C2H3g07911 | CX3g030592 | LOC_Os03g61080 | Os03g0826000 | - | Detail |
| C1H3g21357 | 3:32,326,191-32,328,778 | - | C2H3g28509 | CX3g030265 | LOC_Os03g61100 | Os03g0826300 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g09624 | 1:30,787,077-30,788,245 | - | C1H1g00772 | CX1g005248 | LOC_Os01g60020 | Os01g0816100 | OsNAC4 | Detail |
| C2H1g09286 | 1:30,799,473-30,816,246 | - | C1H1g15712 | CX1g002744 | LOC_Os01g60040 | Os01g0816400 | - | Detail |
| C2H1g26961 | 1:30,828,310-30,834,847 | - | C1H1g15897 | CX1g002744 | LOC_Os01g60050 | Os01g0816500 | - | Detail |
| C2H1g04146 | 1:30,837,506-30,842,632 | + | C1H1g04794 | CX1g001742 | LOC_Os01g60060 | Os01g0816600 | - | Detail |
| C2H1g13967 | 1:30,844,373-30,844,582 | + | C1H1g04794 | CX1g001742 | LOC_Os01g60070 | Os01g0816600 | - | Detail |
| C2H1g24791 | 1:30,845,806-30,847,272 | + | C1H1g24642 | CX1g006929 | LOC_Os01g60080 | Os01g0816700 | - | Detail |
| C2H1g25178 | 1:30,847,362-30,847,664 | + | C1H1g24879 | CX1g006929 | LOC_Os01g60080 | Os01g0816700 | - | Detail |
| C2H1g12383 | 1:30,852,593-30,855,794 | - | C1H1g23182 | CX1g001408 | LOC_Os01g60110 | Os01g0817000 | - | Detail |
| C2H1g27536 | 1:30,858,990-30,862,426 | - | C1H1g20937 | CX1g001908 | LOC_Os01g60120 | Os01g0817100 | - | Detail |
| C2H1g05301 | 1:30,867,420-30,870,525 | + | C1H1g16273 | CX1g005873 | LOC_Os01g60140 | Os01g0817400 | - | Detail |
| C2H1g04044 | 1:30,871,690-30,872,622 | - | C1H1g15906 | CX1g004355 | - | Os01g0286100 | PIL15, OsPIL15, OsbHLH105 | Detail |
| C2H1g17170 | 1:30,884,562-30,888,327 | + | C1H1g14583 | CX1g000357 | LOC_Os01g60190 | Os01g0817700 | - | Detail |
| C2H1g22450 | 1:30,888,779-30,892,097 | - | C1H1g28961 | CX1g003723 | LOC_Os01g60200 | Os01g0817800 | - | Detail |
| C2H1g03576 | 1:30,903,588-30,907,758 | + | C1H1g28985 | CX1g005948 | LOC_Os01g60230 | Os01g0818000 | - | Detail |
| C2H1g16399 | 1:30,911,405-30,912,871 | + | C1H1g10378 | CX1g005236 | - | Os01g0818100 | - | Detail |
| C2H1g17192 | 1:30,922,297-30,925,172 | + | C1H1g09654 | CX1g002636 | LOC_Os01g60260 | Os01g0818300 | - | Detail |
| C2H1g08644 | 1:30,931,215-30,934,712 | + | C1H1g30151 | CX1g003042 | LOC_Os01g60270 | Os01g0818400 | - | Detail |
| C2H1g07956 | 1:30,936,955-30,947,811 | - | C1H1g03453 | CX1g000179 | LOC_Os01g60280 | Os01g0818700 | - | Detail |
| C2H1g13182 | 1:30,953,125-30,956,828 | - | - | - | LOC_Os01g60290 | Os01g0818900 | - | Detail |
| C2H1g24195 | 1:30,956,541-30,960,942 | + | C1H1g23393 | CX1g001508 | LOC_Os01g60309 | Os01g0819000 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |