| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g08097 | 3:31,303,966-31,318,802 | - | C2H3g20910 | CX3g029942 | LOC_Os03g58910 | Os03g0803800 | - | Detail |
| C1H3g06667 | 3:31,319,292-31,323,936 | - | C2H3g11137 | CX3g027632 | LOC_Os03g58920 | Os03g0803900 | - | Detail |
| C1H3g13889 | 3:31,327,556-31,330,061 | + | C2H3g08052 | CX3g025337 | LOC_Os03g58930 | Os03g0804100 | - | Detail |
| C1H3g18947 | 3:31,337,369-31,339,038 | + | C2H3g30090 | CX3g027592 | LOC_Os03g58940 | Os03g0804200 | - | Detail |
| C1H3g06901 | 3:31,339,411-31,340,040 | + | - | - | - | - | - | Detail |
| C1H3g08908 | 3:31,341,706-31,346,966 | - | C2H3g10876 | CX3g024943 | LOC_Os03g58960 | Os03g0804300 | - | Detail |
| C1H3g16246 | 3:31,348,546-31,354,250 | + | C2H3g27290 | CX3g027330 | LOC_Os03g58970 | Os03g0804400 | - | Detail |
| C1H3g07772 | 3:31,361,251-31,366,469 | + | C2H3g08677 | CX3g028935 | LOC_Os03g59020 | Os03g0804800 | - | Detail |
| C1H3g18006 | 3:31,367,537-31,369,493 | - | C2H3g02565 | CX3g027095 | LOC_Os03g59030 | Os03g0804900 | - | Detail |
| C1H3g15435 | 3:31,372,220-31,379,322 | + | C2H3g23943 | CX3g030857 | LOC_Os03g59040 | Os03g0805100 | - | Detail |
| C1H3g07263 | 3:31,379,382-31,384,682 | - | C2H3g11637 | CX3g025026 | LOC_Os03g59050 | Os03g0805200 | - | Detail |
| C1H3g20361 | 3:31,388,921-31,393,492 | + | C2H3g13249 | CX3g030776 | LOC_Os03g59060 | Os03g0805300 | OsPP2A-2 | Detail |
| C1H3g19091 | 3:31,394,936-31,397,184 | - | C2H3g08127 | CX3g031092 | LOC_Os03g59070 | Os03g0805400 | - | Detail |
| C1H3g12066 | 3:31,399,034-31,403,913 | - | C2H3g28737 | CX3g028812 | LOC_Os03g59080 | Os03g0805500 | - | Detail |
| C1H3g30858 | 3:31,406,704-31,409,160 | + | C2H3g24931 | CX3g030524 | LOC_Os03g59110 | Os03g0805600 | - | Detail |
| C1H3g05972 | 3:31,411,591-31,413,933 | + | C2H3g05002 | CX3g030524 | LOC_Os03g59100 | Os03g0805700 | - | Detail |
| C1H3g19569 | 3:31,415,492-31,418,848 | + | C2H3g16039 | CX3g030524 | LOC_Os03g59110 | Os03g0805900 | - | Detail |
| C1H3g19186 | 3:31,420,142-31,420,788 | + | C2H10g26374 | CX10g008540 | - | - | - | Detail |
| C1H3g07939 | 3:31,425,883-31,428,863 | + | C2H3g16313 | CX3g030524 | LOC_Os03g59120 | Os03g0805900 | - | Detail |
| C1H3g06635 | 3:31,429,398-31,433,079 | - | C2H3g13126 | CX3g030941 | LOC_Os03g59160 | Os03g0806400 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H3g02193 | 3:26,699,326-26,706,899 | + | C1H3g19794 | CX3g028424 | LOC_Os03g50980 | Os03g0719100 | SIZ2, OsSIZ2 | Detail |
| C2H3g22670 | 3:26,708,932-26,716,540 | - | C1H3g27091 | CX3g025374 | LOC_Os03g51000 | Os03g0719300 | - | Detail |
| C2H3g02088 | 3:26,720,194-26,723,023 | - | C1H3g07073 | CX3g028369 | LOC_Os03g51010 | Os03g0719400 | - | Detail |
| C2H3g19826 | 3:26,728,386-26,735,558 | - | C1H3g18727 | CX3g030509 | LOC_Os03g51020 | Os03g0719500 | - | Detail |
| C2H3g21521 | 3:26,738,385-26,746,105 | - | C1H3g17828 | CX3g025792 | LOC_Os03g51030 | Os03g0719800 | PHYA, phyA, PHYA* (phyA), PHYA*, Phya, PHY18, phy 18, OsPHYA | Detail |
| C2H3g23219 | 3:26,750,154-26,752,376 | - | C1H3g02668 | CX3g027542 | LOC_Os03g51040 | Os03g0719850 | - | Detail |
| C2H3g09005 | 3:26,753,854-26,757,585 | - | C1H3g04945 | CX3g029279 | LOC_Os03g51050 | Os03g0719900 | - | Detail |
| C2H3g27436 | 3:26,776,619-26,798,197 | + | C1H3g17570 | CX3g026462 | LOC_Os03g51080 | Os03g0720300 | - | Detail |
| C2H3g28128 | 3:26,800,176-26,801,438 | + | C1H3g14449 | CX3g027259 | LOC_Os03g51090 | Os03g0720400 | - | Detail |
| C2H3g18749 | 3:26,802,500-26,803,954 | + | C1H3g00523 | CX11g011204 | LOC_Os11g37260 | - | - | Detail |
| C2H3g30385 | 3:26,815,065-26,819,266 | + | C1H3g14449 | CX3g027259 | LOC_Os03g51090 | Os03g0720400 | - | Detail |
| C2H3g13711 | 3:26,826,622-26,828,116 | + | C1H3g17570 | CX3g026462 | LOC_Os03g51080 | Os03g0720300 | - | Detail |
| C2H3g08962 | 3:26,845,435-26,846,852 | + | C1H3g27041 | CX3g028983 | LOC_Os03g51110 | Os03g0720800 | Os2R_MYB41 | Detail |
| C2H3g28611 | 3:26,857,234-26,880,062 | + | C1H3g28337 | CX3g027802 | LOC_Os03g51140 | Os03g0721200 | - | Detail |
| C2H3g23618 | 3:26,880,115-26,882,433 | - | C1H3g18786 | CX3g029589 | LOC_Os03g51150 | Os03g0721300 | - | Detail |
| C2H3g12002 | 3:26,883,244-26,886,210 | - | C1H3g12607 | CX3g029088 | LOC_Os03g51160 | Os03g0721400 | - | Detail |
| C2H3g26307 | 3:26,890,520-26,893,306 | - | C1H3g28641 | CX3g025020 | LOC_Os03g51180 | - | - | Detail |
| C2H3g16842 | 3:26,903,282-26,903,796 | + | C1H3g29102 | CX3g026654 | LOC_Os03g51200 | Os03g0279200 | - | Detail |
| C2H3g24429 | 3:26,907,935-26,913,652 | + | C1H3g04974 | CX3g029940 | LOC_Os03g51220 | Os03g0722100 | - | Detail |
| C2H3g01976 | 3:26,917,235-26,923,450 | + | C1H3g07846 | CX3g030800 | LOC_Os03g51230 | Os03g0722400 | OsDDM1b | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |