| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g10503 | 3:31,018,725-31,023,261 | + | C2H3g08474 | CX3g030026 | LOC_Os03g58330 | Os03g0797600 | - | Detail |
| C1H3g24967 | 3:31,025,311-31,029,594 | + | C2H3g12283 | CX3g028967 | LOC_Os03g58340 | Os03g0797700 | - | Detail |
| C1H3g07209 | 3:31,031,964-31,032,849 | - | C2H3g10910 | CX3g030491 | LOC_Os03g58350 | Os03g0797800 | - | Detail |
| C1H3g27032 | 3:31,046,482-31,050,991 | + | C2H3g14567 | CX3g026604 | LOC_Os03g58390 | Os03g0798200 | OsSIRP2 | Detail |
| C1H3g07394 | 3:31,055,146-31,056,028 | + | C2H3g12023 | CX3g026933 | - | Os03g0798300 | MET1A, OsMET1a | Detail |
| C1H3g15034 | 3:31,056,280-31,060,214 | + | C2H3g12023 | CX3g026933 | LOC_Os03g58400 | Os03g0798300 | MET1A, OsMET1a | Detail |
| C1H3g27027 | 3:31,067,455-31,068,450 | + | C2H3g14987 | CX3g027494 | LOC_Os03g58420 | Os03g0798500 | WRKY6, OsWRKY6 | Detail |
| C1H3g31831 | 3:31,071,682-31,073,953 | - | C2H3g13256 | CX3g029355 | LOC_Os03g58430 | Os03g0798600 | - | Detail |
| C1H3g10227 | 3:31,093,756-31,095,224 | + | C2H3g19553 | CX3g027700 | LOC_Os03g58470 | Os03g0799000 | - | Detail |
| C1H3g22883 | 3:31,102,124-31,105,137 | + | C2H3g00021 | CX3g027936 | LOC_Os03g58480 | Os03g0799100 | - | Detail |
| C1H3g05533 | 3:31,105,859-31,109,624 | + | C2H3g17340 | CX3g029501 | LOC_Os03g58490 | Os03g0799200 | - | Detail |
| C1H3g27400 | 3:31,119,228-31,119,981 | + | C2H3g24790 | CX3g028436 | LOC_Os03g58520 | Os03g0799500 | - | Detail |
| C1H3g03166 | 3:31,121,390-31,126,631 | + | C2H3g17610 | CX3g026773 | LOC_Os03g58530 | Os03g0799600 | - | Detail |
| C1H3g23240 | 3:31,127,252-31,131,235 | + | C2H3g03002 | CX3g031023 | LOC_Os03g58540 | Os03g0799700 | TSV3, OsObgC2 | Detail |
| C1H3g05452 | 3:31,139,065-31,145,672 | + | C2H3g02702 | CX3g028846 | LOC_Os03g58570 | Os03g0799900 | - | Detail |
| C1H3g28576 | 3:31,154,811-31,161,197 | + | C2H3g08530 | CX3g028891 | LOC_Os03g58590 | Os03g0800100 | - | Detail |
| C1H3g06142 | 3:31,161,949-31,170,862 | - | C2H3g26883 | CX3g030682 | LOC_Os03g58600 | Os03g0800200 | MEL1, mel1, OsMEL1, MEAL1, OsMEAL1 | Detail |
| C1H3g31832 | 3:31,177,115-31,182,312 | - | C2H3g21138 | CX3g025373 | LOC_Os03g58610 | Os03g0800400 | - | Detail |
| C1H3g31423 | 3:31,183,056-31,184,866 | - | C2H3g18555 | CX3g026714 | LOC_Os03g58630 | Os03g0800700 | - | Detail |
| C1H3g10764 | 3:31,185,470-31,194,088 | - | C2H3g28838 | CX3g026264 | LOC_Os03g58640 | Os03g0800800 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H2g29177 | 2:27,727,327-27,728,047 | - | C1H2g10199 | CX2g023592 | LOC_Os02g49410 | Os02g0725900 | HAP3K, OsHAP3K/OsNF-YB1, OsHAP3K, OsNF-YB1, nf-yb1, OsLEC1, OsNF-YB-1, NFYB1, OsEnS-41 | Detail |
| C2H2g08490 | 2:27,734,464-27,735,258 | - | - | CX2g022300 | LOC_Os02g49420 | Os02g0726000 | - | Detail |
| C2H2g29636 | 2:27,742,313-27,743,152 | - | C1H2g09874 | CX2g023852 | LOC_Os02g49440 | Os02g0726300 | - | Detail |
| C2H2g05677 | 2:27,754,641-27,758,029 | + | C1H2g05214 | CX2g019656 | LOC_Os02g49450 | Os02g0726400 | - | Detail |
| C2H2g30015 | 2:27,761,753-27,765,830 | + | C1H2g12431 | CX2g023556 | LOC_Os02g49460 | Os02g0726500 | - | Detail |
| C2H2g00814 | 2:27,768,081-27,768,764 | + | - | CX2g024926 | LOC_Os02g49470 | Os02g0726600 | - | Detail |
| C2H2g09813 | 2:27,769,254-27,771,661 | - | C1H2g21836 | CX2g023944 | LOC_Os02g49480 | Os02g0726700 | OsbHLH034 | Detail |
| C2H2g17575 | 2:27,776,478-27,778,991 | - | C1H2g12455 | CX2g022260 | LOC_Os02g49510 | Os02g0727100 | - | Detail |
| C2H2g05996 | 2:27,780,509-27,785,880 | + | C1H2g29396 | CX2g024123 | LOC_Os02g49520 | Os02g0727300 | - | Detail |
| C2H2g05669 | 2:27,788,543-27,790,875 | - | C1H2g07912 | CX2g019961 | LOC_Os02g49530 | Os02g0727500 | - | Detail |
| C2H2g19256 | 2:27,794,670-27,795,602 | + | C1H2g26668 | CX2g023170 | LOC_Os02g49550 | Os02g0727700 | - | Detail |
| C2H2g25351 | 2:27,807,255-27,807,764 | + | C1H2g05141 | CX2g019013 | LOC_Os02g49560 | Os02g0728001 | bZIP43 | Detail |
| C2H2g28910 | 2:27,809,196-27,817,139 | - | C1H2g01405 | CX2g021134 | LOC_Os02g49570 | Os02g0728100 | - | Detail |
| C2H2g03568 | 2:27,818,993-27,819,614 | + | C1H2g31094 | CX2g022512 | LOC_Os02g49590 | Os02g0728300 | - | Detail |
| C2H2g16287 | 2:27,820,522-27,825,782 | + | C1H2g31094 | CX2g022649 | LOC_Os02g49590 | Os02g0728300 | - | Detail |
| C2H2g29677 | 2:27,820,568-27,821,645 | - | - | CX3g030699 | - | - | - | Detail |
| C2H2g04353 | 2:27,827,242-27,830,998 | - | C1H2g01710 | CX2g020763 | LOC_Os02g49600 | Os02g0728500 | - | Detail |
| C2H2g01821 | 2:27,834,839-27,836,806 | - | C1H2g15124 | CX2g020190 | LOC_Os02g49610 | Os02g0728600 | - | Detail |
| C2H2g11437 | 2:27,837,325-27,840,366 | + | C1H2g22353 | CX2g023333 | LOC_Os02g49620 | Os02g0728700 | - | Detail |
| C2H2g09268 | 2:27,841,086-27,847,518 | + | C1H2g30542 | CX2g023611 | LOC_Os02g49640 | Os02g0728800 | OsTET3 | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |