| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g10503 | 3:31,018,725-31,023,261 | + | C2H3g08474 | CX3g030026 | LOC_Os03g58330 | Os03g0797600 | - | Detail |
| C1H3g24967 | 3:31,025,311-31,029,594 | + | C2H3g12283 | CX3g028967 | LOC_Os03g58340 | Os03g0797700 | - | Detail |
| C1H3g07209 | 3:31,031,964-31,032,849 | - | C2H3g10910 | CX3g030491 | LOC_Os03g58350 | Os03g0797800 | - | Detail |
| C1H3g27032 | 3:31,046,482-31,050,991 | + | C2H3g14567 | CX3g026604 | LOC_Os03g58390 | Os03g0798200 | OsSIRP2 | Detail |
| C1H3g07394 | 3:31,055,146-31,056,028 | + | C2H3g12023 | CX3g026933 | - | Os03g0798300 | MET1A, OsMET1a | Detail |
| C1H3g15034 | 3:31,056,280-31,060,214 | + | C2H3g12023 | CX3g026933 | LOC_Os03g58400 | Os03g0798300 | MET1A, OsMET1a | Detail |
| C1H3g27027 | 3:31,067,455-31,068,450 | + | C2H3g14987 | CX3g027494 | LOC_Os03g58420 | Os03g0798500 | WRKY6, OsWRKY6 | Detail |
| C1H3g31831 | 3:31,071,682-31,073,953 | - | C2H3g13256 | CX3g029355 | LOC_Os03g58430 | Os03g0798600 | - | Detail |
| C1H3g10227 | 3:31,093,756-31,095,224 | + | C2H3g19553 | CX3g027700 | LOC_Os03g58470 | Os03g0799000 | - | Detail |
| C1H3g22883 | 3:31,102,124-31,105,137 | + | C2H3g00021 | CX3g027936 | LOC_Os03g58480 | Os03g0799100 | - | Detail |
| C1H3g05533 | 3:31,105,859-31,109,624 | + | C2H3g17340 | CX3g029501 | LOC_Os03g58490 | Os03g0799200 | - | Detail |
| C1H3g27400 | 3:31,119,228-31,119,981 | + | C2H3g24790 | CX3g028436 | LOC_Os03g58520 | Os03g0799500 | - | Detail |
| C1H3g03166 | 3:31,121,390-31,126,631 | + | C2H3g17610 | CX3g026773 | LOC_Os03g58530 | Os03g0799600 | - | Detail |
| C1H3g23240 | 3:31,127,252-31,131,235 | + | C2H3g03002 | CX3g031023 | LOC_Os03g58540 | Os03g0799700 | TSV3, OsObgC2 | Detail |
| C1H3g05452 | 3:31,139,065-31,145,672 | + | C2H3g02702 | CX3g028846 | LOC_Os03g58570 | Os03g0799900 | - | Detail |
| C1H3g28576 | 3:31,154,811-31,161,197 | + | C2H3g08530 | CX3g028891 | LOC_Os03g58590 | Os03g0800100 | - | Detail |
| C1H3g06142 | 3:31,161,949-31,170,862 | - | C2H3g26883 | CX3g030682 | LOC_Os03g58600 | Os03g0800200 | MEL1, mel1, OsMEL1, MEAL1, OsMEAL1 | Detail |
| C1H3g31832 | 3:31,177,115-31,182,312 | - | C2H3g21138 | CX3g025373 | LOC_Os03g58610 | Os03g0800400 | - | Detail |
| C1H3g31423 | 3:31,183,056-31,184,866 | - | C2H3g18555 | CX3g026714 | LOC_Os03g58630 | Os03g0800700 | - | Detail |
| C1H3g10764 | 3:31,185,470-31,194,088 | - | C2H3g28838 | CX3g026264 | LOC_Os03g58640 | Os03g0800800 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g18558 | 1:25,325,384-25,336,505 | - | C1H1g27870 | CX1g000580 | LOC_Os01g49470 | Os01g0689451 | OsHRZ1 | Detail |
| C2H1g12129 | 1:25,345,489-25,348,646 | - | C1H1g26809 | CX1g003352 | LOC_Os01g49490 | Os01g0689600 | - | Detail |
| C2H1g09258 | 1:25,362,965-25,365,913 | + | C1H1g26834 | CX1g005650 | LOC_Os01g49510 | Os01g0689800 | - | Detail |
| C2H1g12314 | 1:25,366,474-25,371,587 | - | C1H1g04543 | CX1g005155 | LOC_Os01g49529 | Os01g0136400 | - | Detail |
| C2H1g21144 | 1:25,377,673-25,378,829 | - | C1H1g12707 | CX1g005155 | LOC_Os01g49614 | Os01g0689900 | - | Detail |
| C2H1g03260 | 1:25,389,591-25,390,571 | - | C1H1g28357 | CX1g005155 | LOC_Os01g49560 | Os01g0690200 | - | Detail |
| C2H1g20651 | 1:25,416,910-25,417,884 | + | C1H1g30594 | CX1g005155 | LOC_Os01g49614 | Os01g0689900 | - | Detail |
| C2H1g25605 | 1:25,419,802-25,423,102 | + | C1H1g22621 | CX1g002944 | LOC_Os01g49580 | Os01g0691050 | - | Detail |
| C2H1g18077 | 1:25,441,494-25,443,945 | + | C1H1g27228 | CX1g002944 | LOC_Os01g47070 | Os01g0691050 | - | Detail |
| C2H1g22688 | 1:25,444,601-25,445,930 | - | C1H1g29046 | CX1g001683 | LOC_Os01g49640 | Os01g0691100 | - | Detail |
| C2H1g26124 | 1:25,446,618-25,447,880 | + | C1H1g12678 | CX1g006685 | LOC_Os01g49660 | Os01g0691400 | - | Detail |
| C2H1g16571 | 1:25,448,200-25,452,086 | - | C1H1g11648 | CX1g003503 | LOC_Os01g49670 | Os01g0691500 | - | Detail |
| C2H1g18353 | 1:25,452,196-25,460,110 | + | C1H1g24416 | CX1g003138 | LOC_Os01g49680 | Os01g0691600 | - | Detail |
| C2H1g17191 | 1:25,461,815-25,466,276 | + | C1H1g26359 | CX1g001134 | LOC_Os01g49690 | Os01g0691700 | - | Detail |
| C2H1g11955 | 1:25,473,692-25,474,498 | - | C1H1g16215 | CX1g001038 | LOC_Os01g49710 | Os01g0692000 | - | Detail |
| C2H1g27613 | 1:25,477,332-25,478,129 | - | C1H1g06263 | CX1g001038 | LOC_Os01g49720 | Os01g0692100 | - | Detail |
| C2H1g16812 | 1:25,480,796-25,483,638 | + | C1H1g08026 | CX1g002278 | LOC_Os01g49740 | Os01g0692300 | - | Detail |
| C2H1g01533 | 1:25,489,988-25,494,491 | + | C1H1g09942 | CX1g004143 | LOC_Os01g49760 | Os01g0692600 | - | Detail |
| C2H1g21603 | 1:25,495,333-25,498,845 | - | C1H1g28839 | CX1g006365 | LOC_Os01g49770 | Os01g0692700 | OsSIRH2-23, OsRFPH2-23 | Detail |
| C2H1g03137 | 1:25,509,085-25,510,044 | + | C1H1g28446 | CX1g003738 | LOC_Os01g49810 | Os01g0693100 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |