| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g07290 | 3:30,447,966-30,455,222 | - | C2H3g24386 | CX3g029999 | LOC_Os03g57160 | Os03g0785300 | - | Detail |
| C1H3g31468 | 3:30,455,537-30,457,515 | + | C2H3g16096 | CX3g025222 | LOC_Os03g57170 | Os03g0785500 | - | Detail |
| C1H3g09812 | 3:30,479,125-30,482,503 | + | C2H3g04828 | CX3g026845 | LOC_Os03g57210 | Os03g0786000 | - | Detail |
| C1H3g18801 | 3:30,483,838-30,487,350 | + | C2H3g03414 | CX3g026915 | LOC_Os03g57220 | Os03g0786100 | - | Detail |
| C1H3g21165 | 3:30,508,458-30,512,758 | - | C2H3g29782 | CX3g028697 | LOC_Os03g57260 | Os03g0786500 | - | Detail |
| C1H3g31737 | 3:30,516,983-30,522,171 | + | C2H3g21493 | CX3g030417 | LOC_Os03g57280 | Os03g0786700 | - | Detail |
| C1H3g24529 | 3:30,523,086-30,530,176 | + | C2H3g10038 | CX3g028623 | LOC_Os03g57290 | Os03g0786800 | OsCUL4 | Detail |
| C1H3g09796 | 3:30,530,578-30,541,947 | + | C2H3g05716 | CX3g029095 | LOC_Os03g57300 | Os03g0786900 | - | Detail |
| C1H3g02488 | 3:30,545,794-30,546,780 | + | C2H3g27192 | CX3g028386 | LOC_Os03g57310 | Os03g0787000 | OsSYP121 | Detail |
| C1H3g16088 | 3:30,547,496-30,549,708 | - | C2H3g21961 | CX3g030867 | LOC_Os03g57320 | Os03g0787100 | - | Detail |
| C1H3g27975 | 3:30,549,114-30,549,650 | + | - | - | - | - | - | Detail |
| C1H3g27493 | 3:30,550,771-30,554,669 | - | C2H3g21062 | CX3g026667 | LOC_Os03g57330 | Os03g0787200 | - | Detail |
| C1H3g15177 | 3:30,562,744-30,566,195 | + | C2H3g19623 | CX3g029651 | LOC_Os03g57340 | Os03g0787300 | OsDjA5 | Detail |
| C1H3g15799 | 3:30,570,399-30,571,056 | - | - | - | - | - | - | Detail |
| C1H3g31327 | 3:30,571,108-30,571,287 | - | - | - | - | - | - | Detail |
| C1H3g04736 | 3:30,573,063-30,573,365 | - | C2H3g03483 | CX3g028358 | LOC_Os03g57360 | Os03g0813700 | - | Detail |
| C1H3g08399 | 3:30,576,157-30,577,784 | - | C2H3g03483 | CX3g028358 | LOC_Os03g57400 | Os03g0788000 | - | Detail |
| C1H3g02833 | 3:30,580,252-30,580,872 | + | C2H3g16218 | CX3g028483 | LOC_Os03g57410 | Os03g0788100 | - | Detail |
| C1H3g09747 | 3:30,584,790-30,587,122 | + | C2H3g07607 | CX3g026498 | LOC_Os03g57420 | Os03g0788200 | OsMl-2, OsML-2 | Detail |
| C1H3g04463 | 3:30,589,970-30,600,977 | + | C2H3g07013 | CX3g025423 | LOC_Os03g57430 | Os03g0788300 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H2g06770 | 2:9,086,090-9,092,576 | - | C1H2g04839 | CX2g020121 | LOC_Os02g17460 | Os02g0274600 | - | Detail |
| C2H2g25557 | 2:9,094,416-9,095,481 | + | C1H2g13080 | - | - | - | - | Detail |
| C2H2g12255 | 2:9,097,550-9,100,200 | + | C1H2g13080 | CX2g019862 | LOC_Os02g17470 | Os02g0274700 | - | Detail |
| C2H2g07148 | 2:9,111,459-9,118,310 | + | C1H2g20851 | CX2g020679 | LOC_Os02g17500 | Os02g0274900 | - | Detail |
| C2H2g16988 | 2:9,123,672-9,124,927 | + | C1H2g27766 | CX2g021332 | LOC_Os02g17520 | Os02g0275100 | - | Detail |
| C2H2g25493 | 2:9,125,762-9,131,981 | - | C1H2g18414 | CX2g022654 | LOC_Os02g17534 | Os02g0275200 | - | Detail |
| C2H2g12406 | 2:9,138,853-9,140,072 | + | C1H2g18414 | CX2g022654 | LOC_Os02g17590 | - | - | Detail |
| C2H2g19414 | 2:9,144,370-9,146,293 | + | C1H2g18414 | CX2g022452 | LOC_Os02g17534 | Os02g0275200 | - | Detail |
| C2H2g11418 | 2:9,153,298-9,161,883 | - | C1H2g28570 | CX2g024094 | LOC_Os02g17620 | Os02g0276200 | - | Detail |
| C2H2g13253 | 2:9,188,438-9,191,184 | - | C1H2g09318 | CX2g019729 | LOC_Os02g17640 | Os02g0276400 | - | Detail |
| C2H2g02640 | 2:9,192,146-9,200,452 | - | C1H2g06211 | CX2g023106 | LOC_Os02g17650 | Os02g0276500 | OsVTE1 | Detail |
| C2H2g17601 | 2:9,224,532-9,226,293 | - | - | - | - | - | - | Detail |
| C2H2g21214 | 2:9,227,200-9,234,095 | - | C1H2g04949 | CX2g020993 | LOC_Os02g17680 | Os02g0276900 | - | Detail |
| C2H2g16961 | 2:9,244,502-9,246,511 | - | - | - | - | - | - | Detail |
| C2H2g07248 | 2:9,245,242-9,247,742 | + | C1H2g26261 | CX2g020060 | LOC_Os11g06800 | Os02g0231600 | - | Detail |
| C2H2g23233 | 2:9,251,488-9,256,684 | + | C1H2g06748 | CX2g023495 | LOC_Os02g17700 | Os02g0277600 | - | Detail |
| C2H2g21422 | 2:9,257,574-9,260,172 | - | C1H2g21417 | CX2g019451 | LOC_Os02g17710 | Os02g0277700 | - | Detail |
| C2H2g09294 | 2:9,267,786-9,272,819 | + | C1H2g04601 | CX2g022207 | LOC_Os02g17760 | Os02g0278400 | - | Detail |
| C2H2g18932 | 2:9,270,435-9,271,883 | - | - | - | - | Os02g0278450 | - | Detail |
| C2H2g03135 | 2:9,276,565-9,287,809 | - | C1H2g04831 | CX2g024821 | LOC_Os02g17780 | Os02g0278700 | OsCPS1, OsCPS1<sub>ent</sub> | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |