| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g04528 | 3:30,272,971-30,276,458 | - | C2H3g10423 | CX3g030035 | LOC_Os03g56840 | Os03g0781000 | - | Detail |
| C1H3g00697 | 3:30,277,279-30,279,840 | + | C2H3g00662 | CX3g028006 | LOC_Os03g56850 | Os03g0781100 | - | Detail |
| C1H3g00675 | 3:30,281,992-30,282,671 | - | C2H3g16006 | CX3g031346 | LOC_Os03g56860 | Os03g0781300 | - | Detail |
| C1H3g13066 | 3:30,283,566-30,285,409 | - | C2H3g09130 | CX3g029784 | LOC_Os03g56869 | Os03g0781400 | - | Detail |
| C1H3g04826 | 3:30,290,489-30,291,705 | - | C2H3g00286 | CX3g028940 | LOC_Os03g56900 | Os03g0781700 | - | Detail |
| C1H3g18147 | 3:30,312,183-30,315,005 | + | C2H3g19846 | CX3g026212 | LOC_Os03g56950 | Os03g0782500 | PIL13, OsPIL1, OsPIL13, OsbHLH152 | Detail |
| C1H3g10536 | 3:30,321,645-30,324,279 | - | C2H3g26278 | CX3g026808 | LOC_Os03g56960 | Os03g0782900 | - | Detail |
| C1H3g29435 | 3:30,324,400-30,329,732 | + | C2H3g17813 | CX3g030659 | LOC_Os03g56970 | Os03g0783000 | - | Detail |
| C1H3g09935 | 3:30,341,282-30,343,468 | + | C2H3g21267 | - | LOC_Os03g56490 | Os03g0783100 | - | Detail |
| C1H3g22666 | 3:30,344,697-30,345,825 | + | C2H3g27771 | - | LOC_Os03g57010 | Os03g0783100 | - | Detail |
| C1H3g16399 | 3:30,381,888-30,383,625 | - | C2H3g11026 | CX3g026130 | LOC_Os03g57040 | Os03g0783700 | - | Detail |
| C1H3g28995 | 3:30,391,278-30,394,724 | + | C2H3g20647 | CX3g025168 | LOC_Os03g57070 | Os03g0784000 | - | Detail |
| C1H3g19825 | 3:30,400,048-30,401,648 | - | C2H3g12289 | CX3g027646 | LOC_Os03g57080 | Os03g0784100 | - | Detail |
| C1H3g16412 | 3:30,410,869-30,413,489 | - | C2H3g18782 | - | LOC_Os03g57090 | Os03g0784300 | - | Detail |
| C1H3g13683 | 3:30,414,073-30,419,664 | + | C2H3g11402 | CX3g031049 | LOC_Os03g57100 | Os03g0784400 | - | Detail |
| C1H3g10935 | 3:30,419,902-30,424,841 | - | C2H3g07899 | CX3g030487 | LOC_Os03g57110 | Os03g0784500 | - | Detail |
| C1H3g05217 | 3:30,426,462-30,428,894 | - | C2H3g13132 | CX3g029787 | LOC_Os03g57120 | Os03g0784700 | - | Detail |
| C1H3g28643 | 3:30,430,025-30,435,515 | - | C2H3g20434 | CX3g028010 | LOC_Os03g57130 | Os03g0784800 | - | Detail |
| C1H3g24334 | 3:30,440,152-30,442,114 | - | C2H3g13858 | CX3g030089 | LOC_Os03g57140 | Os03g0784900 | - | Detail |
| C1H3g27734 | 3:30,446,671-30,447,609 | - | C2H3g24386 | CX3g029863 | LOC_Os03g57149 | Os03g0785200 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H3g24954 | 3:12,463,962-12,467,261 | + | C1H3g19204 | CX3g029989 | LOC_Os03g24730 | Os03g0362200 | - | Detail |
| C2H3g21455 | 3:12,474,431-12,477,062 | + | C1H3g31305 | CX3g027415 | LOC_Os03g24820 | Os03g0363100 | - | Detail |
| C2H3g21145 | 3:12,478,480-12,480,811 | + | C1H3g22124 | CX3g028253 | LOC_Os03g24830 | Os03g0363200 | - | Detail |
| C2H3g24910 | 3:12,484,109-12,485,941 | + | C1H3g12375 | CX3g025171 | LOC_Os03g24844 | Os03g0363400 | - | Detail |
| C2H3g07234 | 3:12,486,790-12,491,902 | - | C1H3g31412 | CX3g026007 | LOC_Os03g24860 | Os03g0363500 | - | Detail |
| C2H3g23765 | 3:12,493,279-12,498,033 | - | C1H3g09669 | CX3g026520 | LOC_Os03g24870 | Os03g0363600 | OsERD2 | Detail |
| C2H3g07525 | 3:12,499,946-12,503,343 | - | C1H3g25341 | CX3g026469 | LOC_Os03g24880 | Os03g0363700 | - | Detail |
| C2H3g30503 | 3:12,503,622-12,507,768 | + | C1H3g24559 | CX3g025654 | LOC_Os03g24890 | Os03g0363800 | OsSCL28 | Detail |
| C2H3g27719 | 3:12,511,027-12,515,472 | + | C1H3g28751 | CX3g026595 | LOC_Os03g24900 | Os03g0363900 | DHHC09, DHHC09-II | Detail |
| C2H3g02370 | 3:12,516,096-12,518,735 | - | C1H3g13730 | CX3g027300 | LOC_Os03g24910 | Os03g0363950 | - | Detail |
| C2H3g17587 | 3:12,524,315-12,526,950 | - | C1H3g05488 | CX3g025659 | LOC_Os03g24920 | Os03g0364000 | - | Detail |
| C2H3g05857 | 3:12,533,660-12,535,295 | + | C1H3g09584 | CX3g031356 | LOC_Os03g24930 | Os03g0364400 | - | Detail |
| C2H3g14199 | 3:12,540,077-12,547,571 | - | C1H3g19834 | CX3g025767 | LOC_Os03g24940 | Os03g0364500 | - | Detail |
| C2H3g02255 | 3:12,571,730-12,574,717 | + | C1H3g08779 | CX3g028963 | LOC_Os03g24950 | Os03g0364700 | - | Detail |
| C2H3g14794 | 3:12,585,885-12,586,145 | + | C1H3g20332 | CX3g025793 | LOC_Os03g24960 | Os03g0365000 | - | Detail |
| C2H3g19293 | 3:12,592,693-12,595,828 | + | C1H3g24694 | CX3g025793 | LOC_Os03g25000 | Os03g0365000 | - | Detail |
| C2H3g11722 | 3:12,611,705-12,614,922 | + | C1H3g24694 | CX3g025793 | LOC_Os03g25030 | Os03g0365800 | HTA1 | Detail |
| C2H3g14009 | 3:12,616,174-12,619,558 | + | C1H3g02602 | CX3g030240 | LOC_Os03g25040 | Os03g0365900 | - | Detail |
| C2H3g02613 | 3:12,620,568-12,623,197 | - | C1H3g23692 | CX3g028892 | LOC_Os03g25050 | Os03g0366000 | - | Detail |
| C2H3g02942 | 3:12,643,981-12,651,288 | + | C1H3g05133 | CX3g026420 | LOC_Os03g25070 | Os03g0366200 | OsCBK | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |