| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g04528 | 3:30,272,971-30,276,458 | - | C2H3g10423 | CX3g030035 | LOC_Os03g56840 | Os03g0781000 | - | Detail |
| C1H3g00697 | 3:30,277,279-30,279,840 | + | C2H3g00662 | CX3g028006 | LOC_Os03g56850 | Os03g0781100 | - | Detail |
| C1H3g00675 | 3:30,281,992-30,282,671 | - | C2H3g16006 | CX3g031346 | LOC_Os03g56860 | Os03g0781300 | - | Detail |
| C1H3g13066 | 3:30,283,566-30,285,409 | - | C2H3g09130 | CX3g029784 | LOC_Os03g56869 | Os03g0781400 | - | Detail |
| C1H3g04826 | 3:30,290,489-30,291,705 | - | C2H3g00286 | CX3g028940 | LOC_Os03g56900 | Os03g0781700 | - | Detail |
| C1H3g18147 | 3:30,312,183-30,315,005 | + | C2H3g19846 | CX3g026212 | LOC_Os03g56950 | Os03g0782500 | PIL13, OsPIL1, OsPIL13, OsbHLH152 | Detail |
| C1H3g10536 | 3:30,321,645-30,324,279 | - | C2H3g26278 | CX3g026808 | LOC_Os03g56960 | Os03g0782900 | - | Detail |
| C1H3g29435 | 3:30,324,400-30,329,732 | + | C2H3g17813 | CX3g030659 | LOC_Os03g56970 | Os03g0783000 | - | Detail |
| C1H3g09935 | 3:30,341,282-30,343,468 | + | C2H3g21267 | - | LOC_Os03g56490 | Os03g0783100 | - | Detail |
| C1H3g22666 | 3:30,344,697-30,345,825 | + | C2H3g27771 | - | LOC_Os03g57010 | Os03g0783100 | - | Detail |
| C1H3g16399 | 3:30,381,888-30,383,625 | - | C2H3g11026 | CX3g026130 | LOC_Os03g57040 | Os03g0783700 | - | Detail |
| C1H3g28995 | 3:30,391,278-30,394,724 | + | C2H3g20647 | CX3g025168 | LOC_Os03g57070 | Os03g0784000 | - | Detail |
| C1H3g19825 | 3:30,400,048-30,401,648 | - | C2H3g12289 | CX3g027646 | LOC_Os03g57080 | Os03g0784100 | - | Detail |
| C1H3g16412 | 3:30,410,869-30,413,489 | - | C2H3g18782 | - | LOC_Os03g57090 | Os03g0784300 | - | Detail |
| C1H3g13683 | 3:30,414,073-30,419,664 | + | C2H3g11402 | CX3g031049 | LOC_Os03g57100 | Os03g0784400 | - | Detail |
| C1H3g10935 | 3:30,419,902-30,424,841 | - | C2H3g07899 | CX3g030487 | LOC_Os03g57110 | Os03g0784500 | - | Detail |
| C1H3g05217 | 3:30,426,462-30,428,894 | - | C2H3g13132 | CX3g029787 | LOC_Os03g57120 | Os03g0784700 | - | Detail |
| C1H3g28643 | 3:30,430,025-30,435,515 | - | C2H3g20434 | CX3g028010 | LOC_Os03g57130 | Os03g0784800 | - | Detail |
| C1H3g24334 | 3:30,440,152-30,442,114 | - | C2H3g13858 | CX3g030089 | LOC_Os03g57140 | Os03g0784900 | - | Detail |
| C1H3g27734 | 3:30,446,671-30,447,609 | - | C2H3g24386 | CX3g029863 | LOC_Os03g57149 | Os03g0785200 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H2g15398 | 2:23,307,236-23,312,726 | + | C1H2g25292 | CX2g019605 | LOC_Os02g41520 | Os02g0624400 | - | Detail |
| C2H2g09545 | 2:23,316,685-23,323,068 | + | C1H2g21346 | CX2g021076 | LOC_Os02g41550 | Os02g0625000 | - | Detail |
| C2H2g03881 | 2:23,325,318-23,326,799 | + | C1H2g19195 | CX2g022778 | LOC_Os02g41560 | Os02g0625100 | - | Detail |
| C2H2g18059 | 2:23,338,552-23,339,994 | + | C1H2g17897 | CX2g019216 | LOC_Os02g41580 | Os02g0625300 | - | Detail |
| C2H2g11933 | 2:23,344,561-23,350,244 | - | C1H2g11053 | CX2g019321 | LOC_Os02g41590 | Os02g0625500 | - | Detail |
| C2H2g22654 | 2:23,357,208-23,363,875 | + | C1H2g01239 | CX2g021369 | LOC_Os02g41610 | Os02g0625900 | - | Detail |
| C2H2g12458 | 2:23,373,856-23,377,779 | - | C1H2g24503 | CX2g019721 | LOC_Os02g41630 | Os02g0626100 | - | Detail |
| C2H2g01685 | 2:23,386,300-23,391,219 | - | C1H2g10363 | CX2g021604 | LOC_Os02g41650 | Os02g0626400 | - | Detail |
| C2H2g30462 | 2:23,394,640-23,396,781 | - | C1H2g23853 | CX2g023963 | LOC_Os02g41670 | Os02g0626600 | PAL3 | Detail |
| C2H2g15020 | 2:23,399,772-23,402,394 | - | C1H2g05283 | CX2g024160 | LOC_Os02g41680 | Os02g0627100 | OsPAL4 | Detail |
| C2H2g27127 | 2:23,422,550-23,425,349 | + | C1H2g07931 | CX2g021913 | LOC_Os02g41710 | Os02g0627700 | OsCNGC7 | Detail |
| C2H2g10818 | 2:23,426,658-23,427,514 | - | C1H2g13176 | CX2g021975 | LOC_Os02g41760 | Os02g0627900 | - | Detail |
| C2H2g11015 | 2:23,432,712-23,435,727 | + | C1H2g03519 | CX2g024868 | LOC_Os02g41770 | Os02g0628000 | - | Detail |
| C2H2g02567 | 2:23,436,281-23,436,529 | - | - | CX2g021292 | - | Os02g0628100 | - | Detail |
| C2H2g16036 | 2:23,441,908-23,445,862 | + | C1H2g23138 | CX2g021958 | LOC_Os02g41780 | Os02g0628200 | - | Detail |
| C2H2g16187 | 2:23,456,018-23,458,684 | + | C1H2g27536 | CX2g023005 | LOC_Os02g41800 | Os02g0628600 | - | Detail |
| C2H2g19637 | 2:23,471,815-23,472,036 | - | C1H11g05178 | CX2g020319 | LOC_Os02g41820 | Os02g0628800 | OsUBL5.1 | Detail |
| C2H2g07888 | 2:23,475,768-23,476,423 | + | - | - | LOC_Os02g41830 | Os02g0628900 | - | Detail |
| C2H2g29229 | 2:23,479,272-23,479,784 | - | - | CX2g022137 | LOC_Os02g41840 | Os02g0629000 | - | Detail |
| C2H2g09411 | 2:23,486,790-23,490,298 | + | C1H2g18314 | CX2g022423 | LOC_Os02g41860 | Os02g0629200 | OsPIP2;2 | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |