| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g04719 | 3:30,048,261-30,049,679 | + | C2H3g00007 | CX3g026587 | LOC_Os03g56450 | Os03g0775900 | - | Detail |
| C1H3g16991 | 3:30,051,535-30,058,487 | + | C2H3g28249 | CX3g026064 | LOC_Os03g56460 | Os03g0776000 | - | Detail |
| C1H3g04454 | 3:30,058,885-30,060,862 | - | C2H3g15730 | CX3g028659 | LOC_Os03g56470 | Os03g0776100 | OsPERK4 | Detail |
| C1H3g02970 | 3:30,083,179-30,085,217 | + | C2H3g19254 | CX3g025698 | LOC_Os03g56540 | Os03g0776900 | - | Detail |
| C1H3g04407 | 3:30,097,126-30,098,904 | + | C2H3g09900 | CX3g029754 | LOC_Os03g56580 | Os03g0777000 | ONAC066 | Detail |
| C1H3g14095 | 3:30,100,606-30,103,597 | - | C2H3g20066 | CX3g026134 | LOC_Os03g56590 | Os03g0777100 | - | Detail |
| C1H3g29609 | 3:30,105,194-30,106,931 | - | C2H3g09685 | CX3g028274 | LOC_Os03g56610 | Os03g0777500 | - | Detail |
| C1H3g10794 | 3:30,109,421-30,112,114 | + | C2H3g13878 | CX3g026442 | LOC_Os03g56620 | Os03g0777600 | - | Detail |
| C1H3g30679 | 3:30,112,281-30,118,671 | - | C2H3g10928 | CX3g029819 | LOC_Os03g56630 | Os03g0777700 | - | Detail |
| C1H3g05671 | 3:30,124,647-30,132,351 | + | C2H3g07763 | CX3g031249 | LOC_Os03g56660 | Os03g0778000 | - | Detail |
| C1H3g25718 | 3:30,132,787-30,133,497 | - | - | CX3g031326 | LOC_Os03g56670 | Os03g0778100 | OsPS1-F | Detail |
| C1H3g14021 | 3:30,193,021-30,193,974 | - | C2H3g24740 | CX3g030337 | LOC_Os03g56770 | Os03g0779800 | - | Detail |
| C1H3g21633 | 3:30,206,264-30,207,187 | - | C2H3g24740 | CX3g030337 | LOC_Os03g56710 | Os03g0779000 | - | Detail |
| C1H3g29791 | 3:30,221,742-30,226,820 | - | - | CX3g025944 | - | Os03g0748750 | - | Detail |
| C1H3g06826 | 3:30,237,076-30,237,720 | - | C2H3g24740 | CX3g030337 | LOC_Os03g56770 | Os03g0779800 | - | Detail |
| C1H3g23563 | 3:30,250,569-30,253,537 | - | C2H3g20617 | CX3g025581 | LOC_Os03g56790 | Os03g0780400 | OsADF2 | Detail |
| C1H3g23600 | 3:30,255,611-30,260,618 | + | C2H3g18001 | CX3g026219 | LOC_Os03g56800 | Os03g0780500 | - | Detail |
| C1H3g17595 | 3:30,261,445-30,264,457 | + | C2H3g14864 | CX3g030860 | LOC_Os03g56810 | Os03g0780600 | - | Detail |
| C1H3g26439 | 3:30,266,481-30,267,866 | + | C2H3g16433 | CX3g026170 | LOC_Os03g56820 | Os03g0780800 | - | Detail |
| C1H3g14922 | 3:30,269,354-30,271,880 | - | C2H3g03306 | CX3g028624 | LOC_Os03g56830 | Os03g0780900 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H4g19013 | 4:17,293,022-17,293,321 | + | C1H4g13967 | CX4g035834 | LOC_Os04g33560 | Os04g0411200 | - | Detail |
| C2H4g14818 | 4:17,296,776-17,297,201 | + | C1H4g02095 | CX4g035203 | - | - | - | Detail |
| C2H4g06840 | 4:17,306,701-17,308,226 | - | C1H4g06511 | CX4g034096 | LOC_Os04g33570 | Os04g0411400 | RCN4 | Detail |
| C2H4g13082 | 4:17,316,644-17,317,192 | + | C1H4g03675 | - | LOC_Os04g33580 | - | - | Detail |
| C2H4g18183 | 4:17,333,834-17,339,321 | + | C1H4g04480 | CX4g034692 | LOC_Os04g33590 | Os04g0411800 | - | Detail |
| C2H4g17971 | 4:17,341,591-17,346,361 | + | C1H4g04480 | CX4g035360 | LOC_Os04g33600 | Os04g0412000 | - | Detail |
| C2H4g01788 | 4:17,353,943-17,354,566 | + | C1H4g02994 | CX4g035334 | LOC_Os04g33610 | Os04g0412100 | OsBIC1 | Detail |
| C2H4g00589 | 4:17,361,858-17,362,316 | + | C1H4g08221 | CX4g033895 | LOC_Os04g33630 | Os04g0412200 | - | Detail |
| C2H4g24079 | 4:17,367,073-17,382,578 | + | C1H4g08556 | CX4g035419 | LOC_Os04g33660 | Os04g0412500 | - | Detail |
| C2H4g20884 | 4:17,389,543-17,390,328 | + | - | CX2g021594 | LOC_Os04g33670 | Os04g0412700 | - | Detail |
| C2H4g11928 | 4:17,391,230-17,392,576 | + | - | CX4g034454 | LOC_Os04g33680 | Os04g0412800 | - | Detail |
| C2H4g27573 | 4:17,393,756-17,404,376 | + | C1H4g15980 | CX4g035285 | LOC_Os04g33690 | Os04g0412900 | - | Detail |
| C2H4g17905 | 4:17,404,580-17,408,996 | - | C1H4g11558 | CX4g032656 | LOC_Os04g33700 | Os04g0413000 | - | Detail |
| C2H4g06805 | 4:17,411,768-17,414,162 | + | C1H4g31098 | CX4g033899 | LOC_Os04g33720 | Os04g0413200 | OsCIN3 | Detail |
| C2H4g13973 | 4:17,418,965-17,424,157 | + | C1H4g06839 | CX4g035303 | LOC_Os04g33740 | Os04g0413500 | GIF1, gif1, CIN2, OsCIN2, OsGIF1, WB1 | Detail |
| C2H4g25683 | 4:17,446,668-17,450,629 | + | C1H4g19252 | CX4g031791 | LOC_Os04g33770 | Os04g0414000 | - | Detail |
| C2H4g24793 | 4:17,453,525-17,458,645 | + | C1H4g03882 | CX4g033946 | LOC_Os04g33780 | Os04g0414100 | - | Detail |
| C2H4g26864 | 4:17,465,526-17,466,491 | + | C1H4g02836 | CX4g034105 | LOC_Os04g33810 | Os04g0414300 | - | Detail |
| C2H4g04832 | 4:17,475,265-17,477,957 | + | C1H4g11612 | CX4g031478 | LOC_Os04g33830 | Os04g0414700 | - | Detail |
| C2H4g14107 | 4:17,489,153-17,489,745 | - | C1H4g11357 | CX4g032373 | - | - | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |