| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g21651 | 3:29,491,122-29,491,529 | + | C2H3g23566 | CX3g025152 | LOC_Os07g02460 | Os03g0206400 | - | Detail |
| C1H3g30412 | 3:29,493,098-29,497,408 | - | C2H3g21236 | CX3g028267 | LOC_Os03g55450 | Os03g0762700 | - | Detail |
| C1H3g31602 | 3:29,507,666-29,511,887 | + | C2H3g28904 | CX3g027974 | LOC_Os03g55470 | Os03g0762900 | - | Detail |
| C1H3g12054 | 3:29,515,446-29,519,574 | + | C2H3g20218 | CX3g028419 | LOC_Os03g55490 | Os03g0763000 | - | Detail |
| C1H3g10528 | 3:29,542,717-29,545,299 | + | C2H3g15832 | CX3g027285 | LOC_Os03g55530 | Os03g0764000 | GSE3 | Detail |
| C1H3g07992 | 3:29,558,212-29,565,388 | - | C2H3g26472 | CX3g027062 | LOC_Os03g55560 | Os03g0764300 | OstMAPKKK5 | Detail |
| C1H3g05042 | 3:29,563,740-29,565,161 | + | - | CX3g031219 | - | Os03g0764250 | - | Detail |
| C1H3g08783 | 3:29,571,598-29,578,524 | + | C2H3g25717 | CX3g027539 | LOC_Os03g55570 | Os03g0764550 | - | Detail |
| C1H3g17565 | 3:29,587,778-29,589,926 | + | C2H3g13812 | CX3g029766 | LOC_Os03g55590 | Os03g0764600 | OsHHO3 | Detail |
| C1H3g10682 | 3:29,595,065-29,600,114 | + | C2H3g16680 | CX3g030582 | LOC_Os03g55600 | Os03g0764800 | SAPK8, OsSAPK8 | Detail |
| C1H3g29826 | 3:29,617,138-29,619,779 | + | C2H3g01981 | CX3g027424 | LOC_Os03g55620 | Os03g0765000 | - | Detail |
| C1H3g07713 | 3:29,621,338-29,624,205 | + | C2H3g10671 | CX3g029687 | LOC_Os03g55630 | Os03g0765100 | - | Detail |
| C1H3g24709 | 3:29,624,611-29,627,445 | - | C2H3g01497 | CX3g025964 | LOC_Os03g55640 | Os03g0765200 | - | Detail |
| C1H3g19260 | 3:29,634,253-29,637,768 | - | C2H3g05267 | CX3g030762 | LOC_Os03g55660 | Os03g0765400 | - | Detail |
| C1H3g01103 | 3:29,638,504-29,638,797 | - | C2H3g21899 | CX3g030135 | LOC_Os03g55670 | Os03g0765500 | - | Detail |
| C1H3g21398 | 3:29,638,851-29,640,204 | - | C2H3g10178 | CX3g030135 | LOC_Os03g55670 | - | - | Detail |
| C1H3g25450 | 3:29,641,672-29,642,685 | - | C2H3g20680 | CX3g030205 | LOC_Os03g55680 | Os03g0765500 | - | Detail |
| C1H3g27991 | 3:29,661,338-29,664,957 | - | C2H3g07544 | CX3g026492 | LOC_Os03g55730 | Os03g0766000 | - | Detail |
| C1H3g09378 | 3:29,666,999-29,667,235 | - | - | - | - | - | - | Detail |
| C1H3g10434 | 3:29,667,596-29,667,880 | - | C2H3g07544 | CX3g026492 | LOC_Os03g55734 | Os03g0766200 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g03816 | 1:24,817,159-24,833,117 | - | C1H1g22731 | CX1g004904 | LOC_Os01g48680 | Os01g0678500 | TPC1, OsTPC1, Tpc1, OsCC1 | Detail |
| C2H1g17432 | 1:24,834,344-24,836,347 | + | C1H1g06484 | CX1g001832 | LOC_Os01g48690 | Os01g0678600 | - | Detail |
| C2H1g29587 | 1:24,837,207-24,840,189 | - | C1H1g21202 | CX1g005378 | LOC_Os01g48700 | Os01g0678700 | - | Detail |
| C2H1g22453 | 1:24,843,096-24,846,556 | + | C1H1g29809 | CX1g000800 | - | - | - | Detail |
| C2H1g18621 | 1:24,848,468-24,849,100 | - | C1H1g09148 | CX1g006182 | LOC_Os01g48710 | Os01g0678800 | - | Detail |
| C2H1g02873 | 1:24,857,342-24,865,949 | + | C1H1g01369 | CX1g006519 | LOC_Os01g48720 | Os01g0679000 | - | Detail |
| C2H1g10975 | 1:24,874,515-24,879,080 | + | C1H1g09308 | CX1g004313 | LOC_Os01g48750 | Os01g0679550 | - | Detail |
| C2H1g25010 | 1:24,880,657-24,884,018 | + | C1H1g00895 | CX1g003619 | LOC_Os01g48760 | Os01g0679600 | - | Detail |
| C2H1g04367 | 1:24,884,811-24,887,061 | - | - | CX1g000487 | LOC_Os01g48770 | Os01g0679700 | - | Detail |
| C2H1g01242 | 1:24,898,075-24,904,856 | + | C1H1g15404 | CX1g003718 | LOC_Os01g48790 | Os01g0679900 | - | Detail |
| C2H1g04425 | 1:24,898,169-24,898,621 | - | - | - | - | Os01g0680000 | - | Detail |
| C2H1g18628 | 1:24,914,327-24,915,487 | + | C1H1g14743 | CX1g004327 | LOC_Os01g48800 | Os01g0680200 | OsPUP4, BG3/OsPUP4, BG3 | Detail |
| C2H1g11263 | 1:24,914,489-24,915,503 | - | - | - | - | Os01g0680100 | - | Detail |
| C2H1g09841 | 1:24,929,361-24,932,397 | + | C1H1g08166 | CX1g006918 | LOC_Os01g48810 | Os01g0680400 | - | Detail |
| C2H1g14175 | 1:24,937,054-24,937,968 | + | C1H1g07424 | CX1g002655 | LOC_Os01g48820 | Os01g0680600 | - | Detail |
| C2H1g22016 | 1:24,941,731-24,946,829 | - | C1H1g15834 | CX1g002522 | LOC_Os01g48830 | Os01g0680700 | - | Detail |
| C2H1g19155 | 1:24,955,834-24,959,326 | + | - | - | - | Os01g0680950 | - | Detail |
| C2H1g29263 | 1:24,956,786-24,959,385 | - | C1H1g17992 | CX1g007143 | LOC_Os01g48850 | Os01g0680900 | - | Detail |
| C2H1g05013 | 1:24,961,070-24,966,730 | - | C1H1g20689 | CX1g002388 | LOC_Os01g48874 | Os01g0681000 | - | Detail |
| C2H1g04783 | 1:24,969,619-24,970,164 | + | - | CX6g041804 | - | - | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |