| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g16488 | 3:29,354,414-29,357,450 | - | C2H3g12552 | CX3g028552 | LOC_Os03g55180 | Os03g0759000 | - | Detail |
| C1H3g23489 | 3:29,364,287-29,366,215 | + | C2H3g13001 | CX3g026932 | LOC_Os03g55200 | Os03g0759500 | OsORC5 | Detail |
| C1H3g02617 | 3:29,376,896-29,381,336 | + | C2H3g21370 | CX3g030027 | LOC_Os03g55220 | Os03g0759700 | - | Detail |
| C1H3g22708 | 3:29,387,593-29,389,915 | + | C2H3g27540 | CX3g027892 | LOC_Os03g55230 | Os03g0760000 | - | Detail |
| C1H3g12152 | 3:29,394,387-29,397,068 | + | C2H3g20624 | CX3g030489 | LOC_Os03g55240 | Os03g0760200 | Bel, CYP81A6 | Detail |
| C1H3g10305 | 3:29,399,088-29,401,485 | + | C2H3g09774 | CX3g026015 | LOC_Os03g55250 | Os03g0760300 | - | Detail |
| C1H3g04584 | 3:29,403,177-29,406,764 | + | C2H3g11478 | CX3g029417 | LOC_Os03g55260 | Os03g0760500 | - | Detail |
| C1H3g09452 | 3:29,407,238-29,410,200 | - | C2H3g24493 | CX3g029986 | LOC_Os03g55270 | Os03g0760600 | - | Detail |
| C1H3g27656 | 3:29,412,834-29,416,072 | + | C2H3g08027 | CX3g030209 | LOC_Os03g55280 | Os03g0760700 | - | Detail |
| C1H3g11879 | 3:29,417,912-29,418,299 | - | C2H3g21109 | CX3g027262 | LOC_Os03g55290 | Os03g0760800 | GASR1, OsGASR1 | Detail |
| C1H3g27713 | 3:29,421,647-29,423,189 | - | C2H3g17978 | CX3g026450 | LOC_Os03g55310 | Os03g0761000 | - | Detail |
| C1H3g09903 | 3:29,423,755-29,426,376 | - | C2H3g01980 | CX3g026536 | LOC_Os03g55320 | Os03g0761100 | - | Detail |
| C1H3g13690 | 3:29,428,193-29,431,673 | - | C2H3g06672 | CX3g026537 | LOC_Os03g55330 | Os03g0761200 | - | Detail |
| C1H3g30024 | 3:29,447,758-29,452,694 | + | C2H3g12099 | CX3g028991 | LOC_Os03g55360 | Os03g0761700 | - | Detail |
| C1H3g06743 | 3:29,455,275-29,459,139 | + | C2H3g13639 | CX3g030441 | LOC_Os03g55380 | Os03g0761900 | - | Detail |
| C1H3g04781 | 3:29,461,822-29,467,494 | - | C2H3g22708 | CX3g027555 | LOC_Os03g55389 | Os03g0207300 | - | Detail |
| C1H3g13239 | 3:29,469,231-29,470,015 | - | C2H3g06124 | CX3g029923 | LOC_Os03g55400 | Os03g0762100 | - | Detail |
| C1H3g15054 | 3:29,478,120-29,479,413 | + | C2H3g03334 | CX3g027273 | LOC_Os03g55410 | Os03g0762300 | - | Detail |
| C1H3g30848 | 3:29,482,962-29,485,655 | + | C2H3g28441 | CX3g028085 | LOC_Os03g55420 | Os03g0762400 | - | Detail |
| C1H3g27778 | 3:29,490,798-29,491,090 | + | - | - | - | - | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g02733 | 1:884,535-889,937 | + | C1H1g26055 | - | LOC_Os01g02890 | Os01g0118300 | SUI1, OsSUI1, OsPSS-1, PSS-1, OsPSS1, PSS1 | Detail |
| C2H1g25728 | 1:894,155-897,038 | - | C1H1g13587 | - | LOC_Os01g02900 | Os01g0118400 | - | Detail |
| C2H1g24887 | 1:905,925-909,298 | - | C1H1g19340 | - | LOC_Os01g02910 | Os01g0118600 | - | Detail |
| C2H1g16133 | 1:911,678-914,437 | - | C1H1g28376 | - | LOC_Os01g02920 | Os01g0118700 | - | Detail |
| C2H1g28060 | 1:918,001-920,692 | - | C1H1g06299 | - | LOC_Os01g02930 | Os01g0119000 | - | Detail |
| C2H1g09306 | 1:929,892-933,650 | - | C1H1g29708 | - | LOC_Os01g02940 | Os01g0119100 | - | Detail |
| C2H1g08550 | 1:940,072-940,593 | + | C1H1g13986 | - | - | - | - | Detail |
| C2H1g16398 | 1:943,043-943,377 | - | - | - | - | - | - | Detail |
| C2H1g12790 | 1:949,262-951,056 | - | C1H1g01366 | - | LOC_Os01g02900 | Os01g0118400 | - | Detail |
| C2H1g11248 | 1:951,971-959,371 | - | C1H1g03260 | CX1g005069 | LOC_Os01g03020 | Os01g0120300 | - | Detail |
| C2H1g00360 | 1:959,862-962,390 | - | C1H1g11508 | CX1g001161 | LOC_Os01g03030 | Os01g0120400 | - | Detail |
| C2H1g23693 | 1:963,663-965,148 | - | C1H1g03575 | CX1g002228 | LOC_Os01g03040 | Os01g0120500 | - | Detail |
| C2H1g04453 | 1:966,291-968,290 | + | C1H1g25620 | CX1g000645 | LOC_Os01g03050 | Os01g0120600 | - | Detail |
| C2H1g02238 | 1:969,438-970,298 | - | - | CX1g004156 | LOC_Os01g03060 | Os01g0120700 | OsHRC | Detail |
| C2H1g07428 | 1:972,581-979,601 | - | C1H1g21397 | CX1g002673 | LOC_Os01g03070 | Os01g0120800 | - | Detail |
| C2H1g00585 | 1:982,117-982,722 | + | - | CX1g000024 | LOC_Os01g03080 | Os01g0121000 | - | Detail |
| C2H1g24271 | 1:984,465-987,582 | + | C1H1g11884 | CX1g003419 | LOC_Os01g03090 | Os01g0121100 | - | Detail |
| C2H1g00075 | 1:988,256-990,528 | - | C1H1g21163 | CX1g006351 | LOC_Os01g03100 | Os01g0121200 | - | Detail |
| C2H1g03352 | 1:998,181-1,003,121 | - | C1H1g02205 | CX1g000986 | LOC_Os01g03110 | Os01g0121300 | - | Detail |
| C2H1g22579 | 1:1,018,666-1,019,160 | - | C1H1g30654 | CX1g006139 | LOC_Os01g03130 | Os01g0121500 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |