| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g09317 | 3:28,792,248-28,793,942 | + | C2H3g14539 | CX3g030056 | LOC_Os03g53580 | Os03g0747100 | - | Detail |
| C1H3g22291 | 3:28,795,650-28,802,295 | - | C2H3g02909 | CX3g026901 | LOC_Os03g53590 | Os03g0747200 | - | Detail |
| C1H3g07497 | 3:28,805,026-28,808,750 | + | C2H3g11811 | CX3g028280 | LOC_Os03g53600 | Os03g0747300 | - | Detail |
| C1H3g07297 | 3:28,811,334-28,812,045 | - | C2H3g18208 | CX3g028961 | LOC_Os03g53620 | Os03g0747500 | - | Detail |
| C1H3g06756 | 3:28,817,633-28,826,053 | + | C2H3g14898 | CX3g029239 | LOC_Os03g53630 | Os03g0747600 | - | Detail |
| C1H3g01485 | 3:28,826,306-28,827,695 | - | C2H3g17022 | CX3g026060 | LOC_Os03g53640 | Os03g0747700 | - | Detail |
| C1H3g24639 | 3:28,827,752-28,846,218 | + | C2H3g04438 | CX3g030953 | LOC_Os03g53650 | Os03g0747800 | OsOASTL-A1 | Detail |
| C1H3g16019 | 3:28,849,948-28,854,070 | + | C2H3g18336 | CX3g027311 | LOC_Os03g53670 | Os03g0748000 | - | Detail |
| C1H3g23351 | 3:28,863,023-28,866,613 | + | C2H3g11510 | CX3g030125 | LOC_Os03g53700 | Os03g0748200 | - | Detail |
| C1H3g03701 | 3:28,867,738-28,869,714 | - | C2H3g13290 | CX3g025504 | LOC_Os03g53710 | Os03g0748300 | - | Detail |
| C1H3g01499 | 3:28,874,957-28,878,582 | + | C2H3g11594 | CX3g028761 | LOC_Os03g53720 | Os03g0748400 | - | Detail |
| C1H3g16971 | 3:28,879,401-28,880,257 | - | C2H3g19078 | CX3g026934 | LOC_Os03g53730 | Os03g0748500 | - | Detail |
| C1H3g08884 | 3:28,880,628-28,881,346 | + | C2H3g00251 | CX3g025608 | LOC_Os03g53740 | Os03g0748600 | - | Detail |
| C1H3g17123 | 3:28,881,871-28,886,219 | - | C2H3g14266 | CX3g030809 | LOC_Os03g53750 | Os03g0748700 | - | Detail |
| C1H3g07089 | 3:28,886,968-28,894,621 | - | C2H3g05037 | CX3g025195 | LOC_Os03g53760 | Os03g0748800 | - | Detail |
| C1H3g00309 | 3:28,898,076-28,902,129 | + | C2H3g13679 | CX3g031121 | LOC_Os03g53770 | Os03g0748900 | - | Detail |
| C1H3g20459 | 3:28,906,592-28,909,088 | + | C2H3g30032 | CX3g029322 | LOC_Os03g53790 | Os03g0749100 | - | Detail |
| C1H3g09581 | 3:28,921,604-28,925,782 | + | C2H3g10265 | CX3g029115 | LOC_Os03g53800 | Os03g0749300 | - | Detail |
| C1H3g02170 | 3:28,936,004-28,938,122 | + | - | - | - | - | - | Detail |
| C1H3g06500 | 3:28,938,239-28,941,172 | + | C2H3g17987 | CX3g027044 | LOC_Os03g53860 | Os03g0749500 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H3g08716 | 3:16,925,345-16,925,834 | + | C1H3g16844 | - | LOC_Os03g32330 | Os03g0438400 | - | Detail |
| C2H3g25901 | 3:16,975,364-16,976,902 | + | C1H3g27126 | CX3g028421 | LOC_Os03g32470 | Os03g0439500 | - | Detail |
| C2H3g00828 | 3:16,982,325-16,983,125 | - | C1H3g10649 | CX3g029614 | - | Os03g0114400 | - | Detail |
| C2H3g13437 | 3:17,025,684-17,027,541 | - | C1H3g06834 | CX3g025406 | LOC_Os03g32490 | Os03g0439700 | - | Detail |
| C2H3g15363 | 3:17,032,739-17,034,277 | + | C1H3g21761 | CX3g028175 | LOC_Os03g32499 | Os03g0439800 | - | Detail |
| C2H3g25565 | 3:17,052,831-17,055,209 | + | C1H3g11595 | CX3g026641 | LOC_Os03g32580 | Os03g0440900 | - | Detail |
| C2H3g20190 | 3:17,055,536-17,064,832 | - | C1H3g28711 | CX3g027696 | LOC_Os03g32590 | Os03g0441000 | - | Detail |
| C2H3g11825 | 3:17,074,561-17,077,071 | - | C1H3g12283 | CX3g025857 | LOC_Os03g32620 | Os03g0441400 | - | Detail |
| C2H3g07036 | 3:17,168,713-17,169,390 | + | C1H3g09033 | CX3g025420 | LOC_Os03g32790 | Os03g0442900 | - | Detail |
| C2H3g18530 | 3:17,316,196-17,316,901 | - | C1H3g08585 | CX3g029665 | LOC_Os03g33090 | Os03g0445700 | OsLBD37 | Detail |
| C2H3g30048 | 3:17,359,090-17,362,124 | + | C1H3g15486 | CX3g024950 | - | - | - | Detail |
| C2H3g30096 | 3:17,427,330-17,434,816 | - | C1H3g26264 | CX3g029845 | LOC_Os03g33580 | Os03g0448600 | - | Detail |
| C2H3g02896 | 3:17,446,012-17,452,485 | - | C1H3g27459 | CX3g025874 | LOC_Os03g33590 | Os03g0448700 | - | Detail |
| C2H3g09597 | 3:17,504,409-17,508,494 | + | C1H3g11876 | CX3g025469 | LOC_Os03g33650 | Os03g0449200 | SHL4, SHO2, SHO2/SHL4, OsAGO7 | Detail |
| C2H3g06387 | 3:17,573,773-17,577,321 | - | C1H3g10349 | CX3g028866 | LOC_Os03g33012 | Os03g0444900 | OsWRKY33, OsWRKY81 | Detail |
| C2H3g24450 | 3:17,583,817-17,584,173 | - | C1H3g26549 | - | - | Os03g0444900 | OsWRKY33, OsWRKY81 | Detail |
| C2H3g04259 | 3:17,695,517-17,699,643 | - | C1H3g16808 | CX3g031079 | LOC_Os03g34040 | Os03g0452300 | - | Detail |
| C2H3g26683 | 3:17,735,716-17,736,909 | + | - | CX3g027872 | - | Os03g0454300 | - | Detail |
| C2H3g20904 | 3:17,751,779-17,752,998 | + | C1H3g08800 | CX3g026859 | LOC_Os03g34280 | Os03g0453800 | - | Detail |
| C2H3g06895 | 3:17,755,871-17,758,744 | + | C1H3g13672 | CX3g026131 | - | - | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |