| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g27848 | 3:28,587,716-28,588,172 | + | C2H3g14191 | CX3g028042 | LOC_Os03g53160 | - | - | Detail |
| C1H3g26356 | 3:28,609,681-28,612,263 | + | C2H3g23008 | CX3g030521 | LOC_Os03g53190 | Os03g0743400 | - | Detail |
| C1H3g21003 | 3:28,613,443-28,615,185 | + | C2H3g10264 | CX3g027030 | LOC_Os03g53200 | Os03g0743500 | OsCML4 | Detail |
| C1H3g26897 | 3:28,617,839-28,625,628 | + | C2H3g14439 | CX3g025033 | LOC_Os03g53220 | Os03g0743800 | - | Detail |
| C1H3g19995 | 3:28,626,659-28,629,733 | - | C2H3g10097 | CX3g030625 | LOC_Os03g53230 | Os03g0743900 | - | Detail |
| C1H3g23789 | 3:28,643,261-28,651,325 | - | C2H3g30148 | CX3g029313 | LOC_Os03g53250 | Os03g0744300 | - | Detail |
| C1H3g21537 | 3:28,652,191-28,655,135 | - | C2H3g05022 | CX3g029967 | LOC_Os03g53270 | Os03g0744600 | - | Detail |
| C1H3g03638 | 3:28,655,971-28,673,463 | - | C2H3g19445 | CX3g030516 | LOC_Os03g53280 | Os03g0744650 | - | Detail |
| C1H3g09606 | 3:28,683,950-28,685,581 | + | C2H3g24773 | CX3g027888 | LOC_Os03g53300 | Os03g0744700 | - | Detail |
| C1H3g24701 | 3:28,686,436-28,689,063 | - | C2H3g01337 | CX3g026014 | LOC_Os03g53310 | Os03g0744800 | - | Detail |
| C1H3g27592 | 3:28,704,538-28,706,372 | - | C2H3g14025 | CX3g026253 | LOC_Os03g53360 | Os03g0185700 | - | Detail |
| C1H3g20215 | 3:28,709,453-28,711,130 | + | C2H3g17644 | - | LOC_Os03g53390 | Os03g0745550 | - | Detail |
| C1H3g01029 | 3:28,714,714-28,715,558 | + | C2H3g10861 | CX3g031338 | LOC_Os03g53400 | Os03g0745600 | - | Detail |
| C1H3g24433 | 3:28,717,407-28,720,671 | + | C2H3g06392 | CX3g029461 | LOC_Os03g53410 | Os03g0745700 | - | Detail |
| C1H3g09999 | 3:28,741,091-28,741,671 | - | - | - | - | - | - | Detail |
| C1H3g31784 | 3:28,747,157-28,747,581 | + | C2H3g15461 | CX3g028894 | - | - | - | Detail |
| C1H3g23131 | 3:28,754,778-28,756,514 | + | C2H3g22230 | CX3g027402 | LOC_Os03g53490 | Os03g0746400 | - | Detail |
| C1H3g23592 | 3:28,757,144-28,766,685 | - | C2H3g24012 | CX3g029330 | LOC_Os03g53500 | Os03g0746500 | - | Detail |
| C1H3g25130 | 3:28,766,889-28,769,728 | + | C2H3g13665 | CX3g026530 | LOC_Os03g53510 | Os03g0746600 | - | Detail |
| C1H3g29559 | 3:28,779,928-28,782,922 | - | C2H3g00171 | CX3g027302 | LOC_Os03g53530 | Os03g0746800 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g02733 | 1:884,535-889,937 | + | C1H1g26055 | - | LOC_Os01g02890 | Os01g0118300 | SUI1, OsSUI1, OsPSS-1, PSS-1, OsPSS1, PSS1 | Detail |
| C2H1g25728 | 1:894,155-897,038 | - | C1H1g13587 | - | LOC_Os01g02900 | Os01g0118400 | - | Detail |
| C2H1g24887 | 1:905,925-909,298 | - | C1H1g19340 | - | LOC_Os01g02910 | Os01g0118600 | - | Detail |
| C2H1g16133 | 1:911,678-914,437 | - | C1H1g28376 | - | LOC_Os01g02920 | Os01g0118700 | - | Detail |
| C2H1g28060 | 1:918,001-920,692 | - | C1H1g06299 | - | LOC_Os01g02930 | Os01g0119000 | - | Detail |
| C2H1g09306 | 1:929,892-933,650 | - | C1H1g29708 | - | LOC_Os01g02940 | Os01g0119100 | - | Detail |
| C2H1g08550 | 1:940,072-940,593 | + | C1H1g13986 | - | - | - | - | Detail |
| C2H1g16398 | 1:943,043-943,377 | - | - | - | - | - | - | Detail |
| C2H1g12790 | 1:949,262-951,056 | - | C1H1g01366 | - | LOC_Os01g02900 | Os01g0118400 | - | Detail |
| C2H1g11248 | 1:951,971-959,371 | - | C1H1g03260 | CX1g005069 | LOC_Os01g03020 | Os01g0120300 | - | Detail |
| C2H1g00360 | 1:959,862-962,390 | - | C1H1g11508 | CX1g001161 | LOC_Os01g03030 | Os01g0120400 | - | Detail |
| C2H1g23693 | 1:963,663-965,148 | - | C1H1g03575 | CX1g002228 | LOC_Os01g03040 | Os01g0120500 | - | Detail |
| C2H1g04453 | 1:966,291-968,290 | + | C1H1g25620 | CX1g000645 | LOC_Os01g03050 | Os01g0120600 | - | Detail |
| C2H1g02238 | 1:969,438-970,298 | - | - | CX1g004156 | LOC_Os01g03060 | Os01g0120700 | OsHRC | Detail |
| C2H1g07428 | 1:972,581-979,601 | - | C1H1g21397 | CX1g002673 | LOC_Os01g03070 | Os01g0120800 | - | Detail |
| C2H1g00585 | 1:982,117-982,722 | + | - | CX1g000024 | LOC_Os01g03080 | Os01g0121000 | - | Detail |
| C2H1g24271 | 1:984,465-987,582 | + | C1H1g11884 | CX1g003419 | LOC_Os01g03090 | Os01g0121100 | - | Detail |
| C2H1g00075 | 1:988,256-990,528 | - | C1H1g21163 | CX1g006351 | LOC_Os01g03100 | Os01g0121200 | - | Detail |
| C2H1g03352 | 1:998,181-1,003,121 | - | C1H1g02205 | CX1g000986 | LOC_Os01g03110 | Os01g0121300 | - | Detail |
| C2H1g22579 | 1:1,018,666-1,019,160 | - | C1H1g30654 | CX1g006139 | LOC_Os01g03130 | Os01g0121500 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |