| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g21044 | 3:28,407,285-28,411,963 | + | C2H3g05635 | CX3g026362 | LOC_Os03g52840 | Os03g0738400 | - | Detail |
| C1H3g07947 | 3:28,426,568-28,430,229 | + | C2H3g05845 | CX3g025013 | LOC_Os03g52860 | Os03g0738600 | LOX-L2, OsLOX-L2, LOX1.1, LOX L-2, OsLOX2 | Detail |
| C1H3g24267 | 3:28,436,712-28,439,660 | + | C2H3g02923 | CX3g030893 | LOC_Os03g52880 | Os03g0738900 | - | Detail |
| C1H3g14490 | 3:28,448,580-28,450,347 | + | C2H3g01404 | CX3g028113 | LOC_Os03g52910 | Os03g0739700 | - | Detail |
| C1H3g22532 | 3:28,479,943-28,483,987 | + | C2H3g15580 | CX3g026120 | LOC_Os03g52970 | Os03g0740600 | - | Detail |
| C1H3g30167 | 3:28,484,903-28,489,513 | + | C2H3g17064 | CX3g027471 | LOC_Os03g52980 | Os03g0740700 | - | Detail |
| C1H3g01871 | 3:28,493,632-28,496,160 | + | C2H3g00686 | CX3g027476 | LOC_Os03g53000 | Os03g0740800 | - | Detail |
| C1H3g26768 | 3:28,496,541-28,500,749 | + | C2H3g21662 | - | - | - | - | Detail |
| C1H3g08757 | 3:28,507,086-28,509,286 | + | C2H3g06591 | CX3g029988 | LOC_Os03g53020 | Os03g0741100 | OsbHLH148 | Detail |
| C1H3g07900 | 3:28,523,241-28,526,391 | + | C2H3g29971 | CX3g029674 | LOC_Os03g53050 | Os03g0741400 | - | Detail |
| C1H3g12278 | 3:28,532,123-28,533,453 | - | C2H3g23101 | - | - | Os03g0741525 | - | Detail |
| C1H3g27808 | 3:28,544,091-28,544,348 | + | C2H3g26390 | CX3g026540 | - | - | - | Detail |
| C1H3g17107 | 3:28,546,837-28,551,431 | - | C2H3g15523 | CX3g028122 | LOC_Os03g53080 | Os03g0741700 | - | Detail |
| C1H3g25937 | 3:28,551,328-28,551,737 | + | C2H3g20852 | - | - | - | - | Detail |
| C1H3g11146 | 3:28,559,552-28,560,637 | + | C2H3g21579 | CX3g030571 | LOC_Os03g53100 | Os03g0742300 | - | Detail |
| C1H3g09898 | 3:28,561,931-28,566,717 | - | C2H3g18927 | CX3g025479 | LOC_Os03g53110 | Os03g0742400 | - | Detail |
| C1H3g03745 | 3:28,574,781-28,575,712 | + | C2H3g26757 | CX3g029167 | - | - | - | Detail |
| C1H3g23529 | 3:28,576,537-28,582,153 | + | C2H3g15149 | CX3g030577 | LOC_Os03g53140 | Os03g0742800 | - | Detail |
| C1H3g12201 | 3:28,581,074-28,583,176 | - | C2H3g27219 | CX3g026971 | LOC_Os03g53150 | Os03g0742900 | - | Detail |
| C1H3g22035 | 3:28,584,836-28,585,219 | + | C2H3g13028 | - | - | - | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H4g25698 | 4:18,561,902-18,562,768 | + | - | CX4g035076 | LOC_Os04g35580 | Os04g0436000 | - | Detail |
| C2H4g11818 | 4:18,565,115-18,568,046 | - | C1H4g12800 | CX4g033235 | LOC_Os04g35590 | Os04g0436100 | OsACOT | Detail |
| C2H4g10059 | 4:18,569,922-18,572,562 | - | C1H4g13941 | CX4g035055 | LOC_Os04g35600 | Os04g0436300 | - | Detail |
| C2H4g20532 | 4:18,573,215-18,575,272 | - | C1H4g30087 | CX4g035131 | LOC_Os04g35610 | Os04g0584700 | - | Detail |
| C2H4g09494 | 4:18,581,084-18,582,090 | + | C1H4g19500 | CX4g034176 | - | - | - | Detail |
| C2H4g28461 | 4:18,584,286-18,586,448 | - | C1H4g30087 | CX4g032362 | LOC_Os04g35650 | Os04g0436800 | - | Detail |
| C2H4g06819 | 4:18,592,097-18,593,388 | + | C1H4g00410 | CX4g036547 | LOC_Os04g35660 | Os04g0437000 | - | Detail |
| C2H4g24561 | 4:18,604,293-18,606,448 | + | C1H4g01937 | CX4g031828 | LOC_Os04g35680 | Os04g0437300 | - | Detail |
| C2H4g08680 | 4:18,609,812-18,610,978 | + | C1H4g17106 | CX4g032014 | LOC_Os04g35690 | Os04g0437500 | - | Detail |
| C2H4g05233 | 4:18,611,504-18,617,577 | - | C1H4g05515 | CX4g034057 | LOC_Os04g35700 | Os04g0437600 | - | Detail |
| C2H4g05802 | 4:18,634,103-18,637,903 | + | - | CX4g032455 | - | - | - | Detail |
| C2H4g06334 | 4:18,644,831-18,645,349 | - | - | - | LOC_Os04g35730 | - | - | Detail |
| C2H4g19687 | 4:18,649,476-18,649,949 | - | - | CX4g031523 | LOC_Os04g35750 | Os04g0438200 | - | Detail |
| C2H4g05613 | 4:18,650,820-18,652,943 | - | C1H4g09818 | CX4g034717 | LOC_Os04g35760 | Os04g0438300 | - | Detail |
| C2H4g06627 | 4:18,653,242-18,654,681 | + | C1H4g28360 | CX4g035860 | LOC_Os04g35770 | Os04g0438400 | - | Detail |
| C2H4g00301 | 4:18,656,895-18,659,262 | - | C1H4g19872 | CX4g033240 | LOC_Os04g35780 | Os04g0438500 | - | Detail |
| C2H4g06596 | 4:18,666,243-18,669,708 | - | C1H4g20672 | CX4g035378 | LOC_Os04g35790 | Os04g0438600 | - | Detail |
| C2H4g10039 | 4:18,673,157-18,682,049 | - | C1H4g03937 | CX4g036235 | LOC_Os04g35800 | Os04g0438700 | - | Detail |
| C2H4g02895 | 4:18,699,780-18,705,579 | + | C1H4g25308 | CX4g035826 | LOC_Os04g35840 | Os04g0439100 | - | Detail |
| C2H4g26325 | 4:18,706,961-18,709,701 | + | C1H4g23816 | CX4g035975 | LOC_Os04g35860 | Os04g0439200 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |