| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g21044 | 3:28,407,285-28,411,963 | + | C2H3g05635 | CX3g026362 | LOC_Os03g52840 | Os03g0738400 | - | Detail |
| C1H3g07947 | 3:28,426,568-28,430,229 | + | C2H3g05845 | CX3g025013 | LOC_Os03g52860 | Os03g0738600 | LOX-L2, OsLOX-L2, LOX1.1, LOX L-2, OsLOX2 | Detail |
| C1H3g24267 | 3:28,436,712-28,439,660 | + | C2H3g02923 | CX3g030893 | LOC_Os03g52880 | Os03g0738900 | - | Detail |
| C1H3g14490 | 3:28,448,580-28,450,347 | + | C2H3g01404 | CX3g028113 | LOC_Os03g52910 | Os03g0739700 | - | Detail |
| C1H3g22532 | 3:28,479,943-28,483,987 | + | C2H3g15580 | CX3g026120 | LOC_Os03g52970 | Os03g0740600 | - | Detail |
| C1H3g30167 | 3:28,484,903-28,489,513 | + | C2H3g17064 | CX3g027471 | LOC_Os03g52980 | Os03g0740700 | - | Detail |
| C1H3g01871 | 3:28,493,632-28,496,160 | + | C2H3g00686 | CX3g027476 | LOC_Os03g53000 | Os03g0740800 | - | Detail |
| C1H3g26768 | 3:28,496,541-28,500,749 | + | C2H3g21662 | - | - | - | - | Detail |
| C1H3g08757 | 3:28,507,086-28,509,286 | + | C2H3g06591 | CX3g029988 | LOC_Os03g53020 | Os03g0741100 | OsbHLH148 | Detail |
| C1H3g07900 | 3:28,523,241-28,526,391 | + | C2H3g29971 | CX3g029674 | LOC_Os03g53050 | Os03g0741400 | - | Detail |
| C1H3g12278 | 3:28,532,123-28,533,453 | - | C2H3g23101 | - | - | Os03g0741525 | - | Detail |
| C1H3g27808 | 3:28,544,091-28,544,348 | + | C2H3g26390 | CX3g026540 | - | - | - | Detail |
| C1H3g17107 | 3:28,546,837-28,551,431 | - | C2H3g15523 | CX3g028122 | LOC_Os03g53080 | Os03g0741700 | - | Detail |
| C1H3g25937 | 3:28,551,328-28,551,737 | + | C2H3g20852 | - | - | - | - | Detail |
| C1H3g11146 | 3:28,559,552-28,560,637 | + | C2H3g21579 | CX3g030571 | LOC_Os03g53100 | Os03g0742300 | - | Detail |
| C1H3g09898 | 3:28,561,931-28,566,717 | - | C2H3g18927 | CX3g025479 | LOC_Os03g53110 | Os03g0742400 | - | Detail |
| C1H3g03745 | 3:28,574,781-28,575,712 | + | C2H3g26757 | CX3g029167 | - | - | - | Detail |
| C1H3g23529 | 3:28,576,537-28,582,153 | + | C2H3g15149 | CX3g030577 | LOC_Os03g53140 | Os03g0742800 | - | Detail |
| C1H3g12201 | 3:28,581,074-28,583,176 | - | C2H3g27219 | CX3g026971 | LOC_Os03g53150 | Os03g0742900 | - | Detail |
| C1H3g22035 | 3:28,584,836-28,585,219 | + | C2H3g13028 | - | - | - | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g04876 | 1:35,152,531-35,153,143 | - | C1H1g25855 | CX1g006784 | LOC_Os01g68500 | Os01g0913100 | qSL-1f | Detail |
| C2H1g30522 | 1:35,159,643-35,164,322 | + | C1H1g24123 | CX1g001377 | LOC_Os01g68510 | Os01g0913300 | - | Detail |
| C2H1g30357 | 1:35,162,184-35,168,512 | - | C1H1g23891 | CX1g002741 | LOC_Os01g68524 | Os01g0913400 | - | Detail |
| C2H1g21543 | 1:35,168,765-35,169,067 | - | C1H1g23891 | CX1g002741 | LOC_Os01g68524 | Os01g0913400 | - | Detail |
| C2H1g04944 | 1:35,171,622-35,172,936 | - | C1H1g15441 | CX1g003908 | LOC_Os01g68540 | Os01g0913600 | - | Detail |
| C2H1g26704 | 1:35,179,004-35,179,946 | - | C1H1g22812 | CX1g003820 | LOC_Os01g68570 | Os01g0914000 | - | Detail |
| C2H1g28966 | 1:35,188,059-35,188,370 | + | C1H1g03304 | CX1g003755 | LOC_Os01g68589 | Os01g0914300 | - | Detail |
| C2H1g02211 | 1:35,195,172-35,200,594 | - | C1H1g24299 | CX1g005318 | - | - | - | Detail |
| C2H1g06200 | 1:35,201,388-35,208,471 | - | C1H1g05906 | CX1g000258 | LOC_Os01g68610 | Os01g0914600 | - | Detail |
| C2H1g02624 | 1:35,202,511-35,203,420 | + | C1H1g02508 | CX1g003558 | LOC_Os01g68598 | Os01g0914400 | OsEPFL9, STOMAGEN | Detail |
| C2H1g03193 | 1:35,210,308-35,213,611 | + | C1H1g06048 | CX1g005145 | LOC_Os01g68620 | Os01g0914700 | - | Detail |
| C2H1g18412 | 1:35,215,346-35,218,837 | + | C1H1g28356 | CX1g005104 | LOC_Os01g68630 | Os01g0914800 | - | Detail |
| C2H1g04074 | 1:35,237,059-35,246,881 | - | C1H1g17309 | CX1g004590 | LOC_Os01g68680 | Os01g0915400 | - | Detail |
| C2H1g07811 | 1:35,251,093-35,254,122 | - | C1H1g16442 | CX1g001769 | LOC_Os01g68700 | Os01g0915600 | - | Detail |
| C2H1g28604 | 1:35,270,643-35,272,914 | - | C1H1g16263 | CX1g001538 | LOC_Os01g68710 | Os01g0915800 | - | Detail |
| C2H1g15316 | 1:35,276,439-35,277,284 | - | C1H1g06822 | CX1g003545 | LOC_Os01g68720 | Os01g0915900 | - | Detail |
| C2H1g00528 | 1:35,288,171-35,295,263 | - | C1H1g18737 | CX1g000609 | LOC_Os01g68750 | Os01g0916200 | - | Detail |
| C2H1g02052 | 1:35,295,753-35,301,864 | - | C1H1g30491 | CX1g001348 | LOC_Os01g68760 | Os01g0916300 | - | Detail |
| C2H1g27017 | 1:35,307,475-35,310,854 | + | C1H1g06685 | CX1g001819 | LOC_Os01g68770 | Os01g0916400 | OsSBP | Detail |
| C2H1g28521 | 1:35,314,513-35,315,481 | + | C1H1g20243 | CX1g005784 | LOC_Os01g68790 | Os01g0916600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |