| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g21044 | 3:28,407,285-28,411,963 | + | C2H3g05635 | CX3g026362 | LOC_Os03g52840 | Os03g0738400 | - | Detail |
| C1H3g07947 | 3:28,426,568-28,430,229 | + | C2H3g05845 | CX3g025013 | LOC_Os03g52860 | Os03g0738600 | LOX-L2, OsLOX-L2, LOX1.1, LOX L-2, OsLOX2 | Detail |
| C1H3g24267 | 3:28,436,712-28,439,660 | + | C2H3g02923 | CX3g030893 | LOC_Os03g52880 | Os03g0738900 | - | Detail |
| C1H3g14490 | 3:28,448,580-28,450,347 | + | C2H3g01404 | CX3g028113 | LOC_Os03g52910 | Os03g0739700 | - | Detail |
| C1H3g22532 | 3:28,479,943-28,483,987 | + | C2H3g15580 | CX3g026120 | LOC_Os03g52970 | Os03g0740600 | - | Detail |
| C1H3g30167 | 3:28,484,903-28,489,513 | + | C2H3g17064 | CX3g027471 | LOC_Os03g52980 | Os03g0740700 | - | Detail |
| C1H3g01871 | 3:28,493,632-28,496,160 | + | C2H3g00686 | CX3g027476 | LOC_Os03g53000 | Os03g0740800 | - | Detail |
| C1H3g26768 | 3:28,496,541-28,500,749 | + | C2H3g21662 | - | - | - | - | Detail |
| C1H3g08757 | 3:28,507,086-28,509,286 | + | C2H3g06591 | CX3g029988 | LOC_Os03g53020 | Os03g0741100 | OsbHLH148 | Detail |
| C1H3g07900 | 3:28,523,241-28,526,391 | + | C2H3g29971 | CX3g029674 | LOC_Os03g53050 | Os03g0741400 | - | Detail |
| C1H3g12278 | 3:28,532,123-28,533,453 | - | C2H3g23101 | - | - | Os03g0741525 | - | Detail |
| C1H3g27808 | 3:28,544,091-28,544,348 | + | C2H3g26390 | CX3g026540 | - | - | - | Detail |
| C1H3g17107 | 3:28,546,837-28,551,431 | - | C2H3g15523 | CX3g028122 | LOC_Os03g53080 | Os03g0741700 | - | Detail |
| C1H3g25937 | 3:28,551,328-28,551,737 | + | C2H3g20852 | - | - | - | - | Detail |
| C1H3g11146 | 3:28,559,552-28,560,637 | + | C2H3g21579 | CX3g030571 | LOC_Os03g53100 | Os03g0742300 | - | Detail |
| C1H3g09898 | 3:28,561,931-28,566,717 | - | C2H3g18927 | CX3g025479 | LOC_Os03g53110 | Os03g0742400 | - | Detail |
| C1H3g03745 | 3:28,574,781-28,575,712 | + | C2H3g26757 | CX3g029167 | - | - | - | Detail |
| C1H3g23529 | 3:28,576,537-28,582,153 | + | C2H3g15149 | CX3g030577 | LOC_Os03g53140 | Os03g0742800 | - | Detail |
| C1H3g12201 | 3:28,581,074-28,583,176 | - | C2H3g27219 | CX3g026971 | LOC_Os03g53150 | Os03g0742900 | - | Detail |
| C1H3g22035 | 3:28,584,836-28,585,219 | + | C2H3g13028 | - | - | - | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H6g00668 | 6:106,734-109,605 | - | C1H6g30065 | CX6g042200 | LOC_Os06g01360 | Os06g0103300 | - | Detail |
| C2H6g20302 | 6:111,365-112,519 | - | C1H6g13606 | CX6g043876 | LOC_Os06g01370 | Os06g0103400 | - | Detail |
| C2H6g10680 | 6:119,080-123,932 | + | C1H6g31354 | CX6g041620 | LOC_Os06g01390 | Os06g0103500 | - | Detail |
| C2H6g20169 | 6:124,832-135,630 | + | C1H6g22385 | CX6g042856 | LOC_Os06g01400 | Os06g0103600 | - | Detail |
| C2H6g05506 | 6:135,713-138,758 | - | C1H6g20312 | CX6g044938 | LOC_Os06g01410 | Os06g0103700 | - | Detail |
| C2H6g23653 | 6:144,934-150,353 | + | C1H6g00709 | CX6g043252 | LOC_Os06g01440 | Os06g0103800 | - | Detail |
| C2H6g24277 | 6:150,218-153,796 | - | C1H6g01449 | CX6g043093 | LOC_Os06g01450 | Os06g0103900 | - | Detail |
| C2H6g10758 | 6:155,068-160,441 | - | C1H6g04424 | CX6g041561 | LOC_Os06g01460 | Os06g0104000 | - | Detail |
| C2H6g07198 | 6:161,037-162,414 | + | C1H6g31104 | CX6g045523 | LOC_Os06g01470 | Os06g0104100 | - | Detail |
| C2H6g16361 | 6:167,927-169,538 | - | C1H6g19089 | CX6g043638 | LOC_Os06g01480 | Os06g0104200 | OsSWN7 | Detail |
| C2H6g27302 | 6:175,872-185,860 | - | C1H6g16182 | CX6g043927 | LOC_Os06g01490 | Os06g0104300 | - | Detail |
| C2H6g27142 | 6:187,108-187,737 | + | - | CX6g042863 | - | - | - | Detail |
| C2H6g15170 | 6:189,999-190,361 | + | - | CX6g044573 | LOC_Os06g01580 | Os06g0104800 | - | Detail |
| C2H6g24594 | 6:191,831-192,913 | - | C1H6g21098 | CX6g045662 | LOC_Os06g01590 | Os06g0104900 | OsMDH6.1 | Detail |
| C2H6g18455 | 6:197,845-199,434 | - | C1H6g26556 | CX6g042890 | LOC_Os06g01610 | Os06g0105100 | - | Detail |
| C2H6g18581 | 6:205,745-209,725 | + | - | CX6g042555 | LOC_Os06g01620 | Os06g0105350 | OsHAM4 | Detail |
| C2H6g00973 | 6:210,691-215,461 | - | C1H6g23638 | CX6g041390 | LOC_Os06g01630 | Os06g0105400 | - | Detail |
| C2H6g13767 | 6:218,260-220,230 | - | - | - | LOC_Os11g28660 | - | - | Detail |
| C2H6g14279 | 6:228,541-235,419 | + | C1H6g28904 | CX6g043494 | LOC_Os06g01640 | Os06g0105500 | OsPRMT7 | Detail |
| C2H6g08223 | 6:239,319-246,176 | - | C1H6g14685 | CX6g043614 | LOC_Os06g01650 | Os06g0105600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |