| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g21044 | 3:28,407,285-28,411,963 | + | C2H3g05635 | CX3g026362 | LOC_Os03g52840 | Os03g0738400 | - | Detail |
| C1H3g07947 | 3:28,426,568-28,430,229 | + | C2H3g05845 | CX3g025013 | LOC_Os03g52860 | Os03g0738600 | LOX-L2, OsLOX-L2, LOX1.1, LOX L-2, OsLOX2 | Detail |
| C1H3g24267 | 3:28,436,712-28,439,660 | + | C2H3g02923 | CX3g030893 | LOC_Os03g52880 | Os03g0738900 | - | Detail |
| C1H3g14490 | 3:28,448,580-28,450,347 | + | C2H3g01404 | CX3g028113 | LOC_Os03g52910 | Os03g0739700 | - | Detail |
| C1H3g22532 | 3:28,479,943-28,483,987 | + | C2H3g15580 | CX3g026120 | LOC_Os03g52970 | Os03g0740600 | - | Detail |
| C1H3g30167 | 3:28,484,903-28,489,513 | + | C2H3g17064 | CX3g027471 | LOC_Os03g52980 | Os03g0740700 | - | Detail |
| C1H3g01871 | 3:28,493,632-28,496,160 | + | C2H3g00686 | CX3g027476 | LOC_Os03g53000 | Os03g0740800 | - | Detail |
| C1H3g26768 | 3:28,496,541-28,500,749 | + | C2H3g21662 | - | - | - | - | Detail |
| C1H3g08757 | 3:28,507,086-28,509,286 | + | C2H3g06591 | CX3g029988 | LOC_Os03g53020 | Os03g0741100 | OsbHLH148 | Detail |
| C1H3g07900 | 3:28,523,241-28,526,391 | + | C2H3g29971 | CX3g029674 | LOC_Os03g53050 | Os03g0741400 | - | Detail |
| C1H3g12278 | 3:28,532,123-28,533,453 | - | C2H3g23101 | - | - | Os03g0741525 | - | Detail |
| C1H3g27808 | 3:28,544,091-28,544,348 | + | C2H3g26390 | CX3g026540 | - | - | - | Detail |
| C1H3g17107 | 3:28,546,837-28,551,431 | - | C2H3g15523 | CX3g028122 | LOC_Os03g53080 | Os03g0741700 | - | Detail |
| C1H3g25937 | 3:28,551,328-28,551,737 | + | C2H3g20852 | - | - | - | - | Detail |
| C1H3g11146 | 3:28,559,552-28,560,637 | + | C2H3g21579 | CX3g030571 | LOC_Os03g53100 | Os03g0742300 | - | Detail |
| C1H3g09898 | 3:28,561,931-28,566,717 | - | C2H3g18927 | CX3g025479 | LOC_Os03g53110 | Os03g0742400 | - | Detail |
| C1H3g03745 | 3:28,574,781-28,575,712 | + | C2H3g26757 | CX3g029167 | - | - | - | Detail |
| C1H3g23529 | 3:28,576,537-28,582,153 | + | C2H3g15149 | CX3g030577 | LOC_Os03g53140 | Os03g0742800 | - | Detail |
| C1H3g12201 | 3:28,581,074-28,583,176 | - | C2H3g27219 | CX3g026971 | LOC_Os03g53150 | Os03g0742900 | - | Detail |
| C1H3g22035 | 3:28,584,836-28,585,219 | + | C2H3g13028 | - | - | - | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H5g18573 | 5:24,642,573-24,646,550 | - | C1H5g06374 | CX5g037718 | LOC_Os05g51190 | Os05g0589700 | - | Detail |
| C2H5g15682 | 5:24,653,985-24,655,433 | - | C1H5g25711 | CX5g040079 | LOC_Os05g51220 | Os05g0590000 | - | Detail |
| C2H5g27742 | 5:24,656,416-24,658,252 | + | C1H5g15774 | CX5g040435 | LOC_Os05g51230 | Os05g0590100 | - | Detail |
| C2H5g27114 | 5:24,660,356-24,662,176 | - | C1H5g25595 | CX5g040181 | LOC_Os05g51240 | Os05g0590300 | D14L2a | Detail |
| C2H5g10959 | 5:24,669,243-24,670,635 | + | C1H5g16193 | CX5g039719 | LOC_Os05g51360 | Os05g0591400 | OsEBS | Detail |
| C2H5g16340 | 5:24,678,406-24,682,258 | + | C1H5g00184 | CX5g037625 | LOC_Os05g51390 | Os05g0591600 | LOGL8 | Detail |
| C2H5g03812 | 5:24,687,255-24,692,176 | + | C1H5g07610 | CX5g037154 | LOC_Os05g51400 | Os05g0591800 | - | Detail |
| C2H5g08893 | 5:24,693,725-24,698,056 | - | C1H5g17721 | CX5g037640 | LOC_Os05g51420 | Os08g0398400 | OsHIR1, OsHSI1 | Detail |
| C2H5g12015 | 5:24,701,036-24,702,133 | + | C1H5g09746 | - | LOC_Os05g51440 | Os05g0592000 | - | Detail |
| C2H5g20454 | 5:24,702,367-24,705,799 | - | C1H5g13463 | CX5g037130 | LOC_Os05g51450 | Os05g0592100 | AL3, OsClpR1 | Detail |
| C2H5g22532 | 5:24,711,320-24,713,458 | + | C1H5g18064 | CX5g037674 | LOC_Os05g51470 | Os05g0592300 | - | Detail |
| C2H5g07753 | 5:24,715,854-24,716,153 | - | C1H5g29997 | - | LOC_Os04g46270 | - | - | Detail |
| C2H5g11116 | 5:24,716,307-24,716,751 | - | C1H5g01451 | CX5g040049 | - | Os04g0547800 | - | Detail |
| C2H5g07712 | 5:24,717,185-24,732,694 | + | C1H5g21435 | CX5g040707 | LOC_Os05g51480 | Os05g0592400 | - | Detail |
| C2H5g25797 | 5:24,734,820-24,740,734 | - | C1H5g00098 | CX5g041136 | LOC_Os05g51500 | Os05g0592600 | - | Detail |
| C2H5g18379 | 5:24,742,550-24,745,294 | - | C1H5g06239 | CX5g038095 | LOC_Os05g51510 | Os05g0592800 | - | Detail |
| C2H5g13073 | 5:24,749,220-24,755,513 | - | C1H5g06040 | CX5g040640 | LOC_Os05g51520 | Os05g0593100 | - | Detail |
| C2H5g03858 | 5:24,755,854-24,758,005 | - | C1H5g29585 | CX5g039758 | LOC_Os05g51540 | Os05g0593200 | - | Detail |
| C2H5g22607 | 5:24,758,028-24,770,771 | - | C1H5g12721 | CX5g036829 | LOC_Os05g51550 | Os05g0593550 | - | Detail |
| C2H5g18281 | 5:24,772,134-24,772,583 | - | C1H5g11475 | - | - | - | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |