| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g02211 | 3:28,281,341-28,283,379 | + | C2H3g22735 | CX3g030643 | LOC_Os03g52560 | Os03g0735800 | - | Detail |
| C1H3g28253 | 3:28,283,906-28,285,828 | - | C2H3g00875 | CX3g029619 | LOC_Os03g52570 | Os03g0735900 | OsRAM2 | Detail |
| C1H3g25411 | 3:28,287,765-28,296,858 | - | C2H3g10556 | CX3g030559 | LOC_Os03g52594 | Os03g0736000 | - | Detail |
| C1H3g22504 | 3:28,299,829-28,301,262 | + | C2H3g24120 | CX3g025823 | LOC_Os03g52620 | Os03g0736200 | - | Detail |
| C1H3g23470 | 3:28,301,899-28,305,422 | - | C2H3g21608 | CX3g028973 | LOC_Os03g52630 | Os03g0736300 | - | Detail |
| C1H3g16767 | 3:28,308,716-28,312,101 | - | C2H3g15503 | CX3g029628 | LOC_Os03g52640 | Os03g0736400 | - | Detail |
| C1H3g06383 | 3:28,313,769-28,317,383 | + | C2H3g14297 | CX3g026452 | LOC_Os03g52650 | Os03g0736500 | - | Detail |
| C1H3g27583 | 3:28,318,177-28,318,404 | - | C2H3g25472 | CX3g030782 | LOC_Os03g52670 | Os03g0736700 | - | Detail |
| C1H3g27539 | 3:28,318,432-28,319,220 | - | C2H3g25472 | CX3g030782 | LOC_Os03g52670 | Os03g0736700 | - | Detail |
| C1H3g22100 | 3:28,324,756-28,328,762 | - | C2H3g06997 | CX3g030023 | LOC_Os03g52690 | Os03g0737000 | - | Detail |
| C1H3g13284 | 3:28,333,074-28,341,581 | - | C2H3g03773 | CX3g030091 | LOC_Os03g52700 | Os03g0737200 | OsHOS1 | Detail |
| C1H3g01016 | 3:28,342,085-28,345,721 | - | C2H3g13435 | CX3g030361 | LOC_Os03g52720 | Os03g0737300 | - | Detail |
| C1H3g28619 | 3:28,346,454-28,349,041 | - | C2H3g06862 | CX3g030361 | LOC_Os03g52730 | Os03g0737400 | - | Detail |
| C1H3g18700 | 3:28,351,762-28,355,939 | + | C2H3g04382 | CX3g025820 | LOC_Os03g52750 | Os03g0737600 | - | Detail |
| C1H3g06923 | 3:28,360,088-28,362,643 | - | C2H3g27223 | CX3g026634 | LOC_Os03g52760 | Os03g0737701 | OsMIK, LPA | Detail |
| C1H3g07843 | 3:28,362,666-28,367,096 | + | - | - | - | - | - | Detail |
| C1H3g13520 | 3:28,368,759-28,378,669 | + | C2H3g08831 | CX3g025574 | LOC_Os03g52770 | Os03g0737800 | - | Detail |
| C1H3g22442 | 3:28,378,877-28,382,100 | - | C2H3g00418 | CX3g026366 | LOC_Os03g52780 | Os03g0737900 | - | Detail |
| C1H3g19238 | 3:28,382,346-28,385,940 | + | C2H3g24375 | CX3g026865 | LOC_Os03g52794 | Os03g0738000 | - | Detail |
| C1H3g14512 | 3:28,386,722-28,405,736 | + | C2H3g01060 | CX3g030189 | LOC_Os03g52794 | Os03g0738100 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H12g21630 | 12:19,495,082-19,500,363 | + | C1H12g09007 | CX12g015608 | LOC_Os12g38110 | Os12g0568800 | - | Detail |
| C2H12g09314 | 12:19,502,683-19,503,363 | + | C1H12g02048 | CX12g016110 | LOC_Os12g38120 | Os12g0568900 | - | Detail |
| C2H12g01725 | 12:19,508,960-19,509,454 | + | C1H12g18175 | CX12g016216 | LOC_Os12g38140 | Os12g0569200 | - | Detail |
| C2H12g10251 | 12:19,523,987-19,524,682 | + | C1H12g06244 | CX12g016111 | LOC_Os12g38150 | Os12g0569300 | OsOSM2 | Detail |
| C2H12g16373 | 12:19,531,758-19,532,462 | + | C1H12g28088 | CX12g018210 | LOC_Os12g38170 | Os12g0569500 | OsOSM1 | Detail |
| C2H12g12141 | 12:19,535,575-19,540,875 | + | C1H12g30666 | CX12g016733 | - | Os12g0569700 | - | Detail |
| C2H12g20078 | 12:19,547,901-19,549,374 | + | C1H12g00168 | CX12g018309 | LOC_Os12g38200 | Os12g0590700 | - | Detail |
| C2H12g18880 | 12:19,556,496-19,561,639 | - | C1H12g10303 | CX12g018422 | LOC_Os12g38210 | Os12g0570000 | SPL11 | Detail |
| C2H12g04128 | 12:19,569,888-19,570,472 | - | C1H12g24928 | CX12g016731 | LOC_Os12g38230 | Os12g0570300 | - | Detail |
| C2H12g09583 | 12:19,576,765-19,577,397 | + | C1H12g24952 | CX12g015447 | LOC_Os12g38250 | Os12g0570400 | - | Detail |
| C2H12g26301 | 12:19,578,296-19,583,174 | + | C1H12g04792 | CX12g017144 | LOC_Os12g38260 | Os12g0570500 | - | Detail |
| C2H12g00566 | 12:19,585,515-19,586,089 | + | C1H12g24857 | CX12g017124 | LOC_Os12g38270 | Os12g0570700 | - | Detail |
| C2H12g13163 | 12:19,590,359-19,591,046 | + | C1H12g22227 | CX12g017124 | LOC_Os12g38290 | Os12g0571000 | - | Detail |
| C2H12g18304 | 12:19,592,855-19,593,487 | + | C1H12g10209 | CX12g017124 | LOC_Os12g38290 | Os12g0571100 | MTI4C, MT-1-4b, OsMT1d, OsMT-I-4c | Detail |
| C2H12g08353 | 12:19,594,388-19,595,845 | + | C1H12g31880 | CX12g018738 | LOC_Os12g38310 | Os12g0571200 | - | Detail |
| C2H12g09891 | 12:19,597,833-19,598,603 | - | C1H12g16299 | CX12g015965 | LOC_Os12g38320 | Os12g0571300 | - | Detail |
| C2H12g06418 | 12:19,607,776-19,608,225 | - | C1H12g29524 | CX12g015646 | - | - | - | Detail |
| C2H12g12045 | 12:19,613,492-19,613,893 | + | C1H12g00013 | CX12g018241 | LOC_Os12g38340 | Os12g0571500 | - | Detail |
| C2H12g22265 | 12:19,616,933-19,617,367 | + | C1H12g14796 | CX12g017618 | LOC_Os12g38350 | Os12g0571600 | - | Detail |
| C2H12g04558 | 12:19,619,310-19,619,678 | + | C1H12g13878 | CX12g017487 | LOC_Os12g38360 | Os12g0571700 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |