| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g05748 | 3:28,131,029-28,135,020 | - | C2H3g17794 | CX3g028410 | LOC_Os03g52180 | Os03g0732000 | OsIspH2 | Detail |
| C1H3g07434 | 3:28,157,029-28,166,582 | + | C2H3g20028 | CX3g027773 | LOC_Os03g52239 | Os03g0732100 | ROSES1 | Detail |
| C1H3g11344 | 3:28,175,978-28,177,371 | - | C2H3g11203 | CX3g025156 | LOC_Os03g52280 | Os03g0733000 | - | Detail |
| C1H3g21763 | 3:28,189,063-28,191,231 | - | C2H3g04619 | CX3g026785 | LOC_Os03g52310 | Os03g0733400 | - | Detail |
| C1H3g23506 | 3:28,195,123-28,198,970 | - | C2H3g09605 | CX3g025961 | LOC_Os03g52320 | Os03g0733600 | OsGIF1, MKB3 | Detail |
| C1H3g07461 | 3:28,215,087-28,218,718 | - | C2H3g27935 | CX3g025745 | LOC_Os03g52340 | Os03g0733800 | OsERO1, OsEro1 | Detail |
| C1H3g05494 | 3:28,219,060-28,219,769 | - | C2H3g27141 | CX3g025745 | LOC_Os03g52340 | Os03g0733800 | OsERO1, OsEro1 | Detail |
| C1H3g23554 | 3:28,225,622-28,225,986 | + | C2H3g09869 | CX3g030687 | LOC_Os03g52360 | Os03g0734000 | - | Detail |
| C1H3g05445 | 3:28,229,476-28,229,850 | + | C2H3g10253 | CX3g025126 | LOC_Os03g52370 | Os03g0734100 | - | Detail |
| C1H3g04075 | 3:28,230,785-28,231,164 | + | C2H3g03601 | CX3g030269 | LOC_Os03g52380 | Os03g0734200 | - | Detail |
| C1H3g13317 | 3:28,232,620-28,232,968 | + | C2H3g04628 | CX3g028713 | LOC_Os03g52390 | Os03g0734300 | - | Detail |
| C1H3g23948 | 3:28,240,405-28,245,081 | - | C2H3g18785 | CX3g025429 | LOC_Os03g52430 | Os03g0734700 | - | Detail |
| C1H3g00521 | 3:28,249,444-28,254,003 | - | C2H3g00406 | CX3g025463 | LOC_Os03g52450 | Os03g0734900 | - | Detail |
| C1H3g04061 | 3:28,254,438-28,259,246 | - | C2H3g22726 | CX3g028629 | LOC_Os03g52460 | Os03g0735000 | - | Detail |
| C1H3g26718 | 3:28,255,210-28,255,978 | + | - | - | - | Os03g0735025 | - | Detail |
| C1H3g23423 | 3:28,261,902-28,266,895 | + | C2H3g20865 | CX3g025816 | LOC_Os03g52470 | Os03g0735100 | - | Detail |
| C1H3g03226 | 3:28,265,312-28,265,786 | - | - | - | - | Os03g0735150 | - | Detail |
| C1H3g22763 | 3:28,267,614-28,269,101 | - | C2H3g09114 | CX3g028779 | LOC_Os03g52475 | Os03g0735200 | - | Detail |
| C1H3g28384 | 3:28,272,368-28,275,961 | - | C2H3g10977 | CX3g030925 | LOC_Os03g52490 | Os03g0735300 | - | Detail |
| C1H3g06992 | 3:28,280,737-28,281,234 | + | C2H3g04119 | CX3g030643 | - | - | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H3g14207 | 3:133,794-134,079 | - | - | CX3g030057 | - | Os03g0102000 | - | Detail |
| C2H3g00981 | 3:133,870-138,264 | + | C1H3g25020 | CX3g027602 | LOC_Os03g01230 | Os03g0102200 | - | Detail |
| C2H3g16038 | 3:142,600-153,389 | + | C1H3g05989 | CX3g029938 | LOC_Os03g01240 | Os03g0102300 | - | Detail |
| C2H3g07325 | 3:155,037-159,615 | + | C1H3g05608 | CX3g029938 | LOC_Os03g01240 | Os03g0102366 | - | Detail |
| C2H3g23495 | 3:159,429-164,729 | - | C1H3g25301 | CX3g027923 | LOC_Os03g01250 | Os03g0102400 | - | Detail |
| C2H3g09146 | 3:168,302-169,141 | - | C1H3g20737 | CX3g028399 | LOC_Os03g01260 | Os03g0102500 | - | Detail |
| C2H3g19463 | 3:174,039-175,541 | + | C1H3g18000 | CX3g030913 | LOC_Os03g01270 | Os03g0102700 | OsEXPB7 | Detail |
| C2H3g08091 | 3:184,712-188,564 | + | C1H3g03491 | CX3g027138 | LOC_Os03g01290 | Os03g0103000 | - | Detail |
| C2H3g23946 | 3:189,670-191,920 | + | - | - | - | - | - | Detail |
| C2H3g24645 | 3:196,980-197,405 | + | C1H3g01568 | CX3g025864 | LOC_Os03g01300 | Os03g0103100 | - | Detail |
| C2H3g00230 | 3:199,926-200,357 | + | C1H3g01568 | CX3g025864 | LOC_Os03g01300 | Os03g0103200 | - | Detail |
| C2H3g27129 | 3:208,983-209,564 | + | C1H3g18184 | CX3g025864 | LOC_Os03g01320 | Os03g0103300 | qLTG-3-1(t), qLTG-3-1(t), qLTG3-1, OsHyPRP05, OsHyPRP5, HyP/GRP05, HyP/GRP5 | Detail |
| C2H3g00666 | 3:218,224-219,759 | + | C1H3g24558 | CX3g025803 | - | Os03g0103400 | - | Detail |
| C2H3g07381 | 3:229,277-231,060 | + | C1H3g28077 | CX3g025211 | LOC_Os03g01530 | Os03g0105600 | - | Detail |
| C2H3g12984 | 3:233,719-235,979 | - | C1H3g23454 | CX3g026334 | LOC_Os03g01540 | Os03g0105700 | OsAHL6 | Detail |
| C2H3g00326 | 3:237,525-241,430 | - | C1H3g02722 | CX3g030126 | LOC_Os03g01550 | Os03g0105800 | - | Detail |
| C2H3g00355 | 3:244,970-247,830 | - | C1H3g03839 | CX3g030694 | LOC_Os03g01570 | Os03g0106000 | - | Detail |
| C2H3g00823 | 3:249,623-254,908 | - | C1H3g18280 | CX3g029689 | LOC_Os03g01580 | Os03g0106200 | - | Detail |
| C2H3g10053 | 3:258,131-262,210 | - | C1H3g03593 | CX3g031070 | LOC_Os03g01590 | Os03g0106300 | PAIR1, Pair1 | Detail |
| C2H3g14376 | 3:262,800-267,287 | - | C1H3g13137 | CX3g025678 | LOC_Os03g01600 | Os03g0106400 | OsBCAT1 | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |