| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g25139 | 3:27,970,428-27,972,739 | - | C2H3g06497 | CX3g026713 | LOC_Os03g51920 | Os03g0729000 | - | Detail |
| C1H3g11342 | 3:27,975,590-27,977,281 | - | C2H3g02798 | CX3g029290 | LOC_Os03g51930 | Os03g0729100 | - | Detail |
| C1H3g30625 | 3:27,980,232-27,983,273 | - | C2H3g03322 | CX3g030181 | LOC_Os03g51950 | Os03g0729200 | - | Detail |
| C1H3g13523 | 3:27,986,042-27,987,773 | - | C2H3g24100 | CX3g029650 | LOC_Os03g51960 | Os03g0729300 | - | Detail |
| C1H3g25309 | 3:28,011,577-28,015,533 | + | C2H3g29250 | CX3g026395 | LOC_Os03g51970 | Os03g0729500 | GRF6, OsGRF6 | Detail |
| C1H3g03104 | 3:28,017,173-28,018,094 | - | C2H3g12464 | - | - | - | - | Detail |
| C1H3g10749 | 3:28,018,480-28,021,182 | + | C2H3g18708 | CX3g025921 | LOC_Os03g51984 | Os03g0729700 | - | Detail |
| C1H3g20671 | 3:28,026,172-28,026,618 | + | C2H3g00085 | CX3g030041 | LOC_Os03g51990 | Os03g0729800 | - | Detail |
| C1H3g23285 | 3:28,026,698-28,028,174 | + | C2H3g30065 | CX3g030041 | LOC_Os03g51990 | Os03g0729800 | - | Detail |
| C1H3g08051 | 3:28,028,283-28,033,265 | - | C2H3g12843 | CX3g029030 | LOC_Os03g52000 | Os03g0729900 | - | Detail |
| C1H3g02659 | 3:28,035,981-28,037,833 | - | C2H3g06578 | CX3g026263 | LOC_Os03g52010 | Os03g0730000 | - | Detail |
| C1H3g27135 | 3:28,046,733-28,052,544 | + | C2H3g03305 | CX3g025486 | LOC_Os03g52040 | Os03g0730400 | - | Detail |
| C1H3g19587 | 3:28,059,497-28,063,952 | + | C2H3g11768 | CX3g025486 | LOC_Os03g52070 | Os03g0730500 | - | Detail |
| C1H3g15717 | 3:28,069,300-28,074,955 | + | C2H3g24985 | CX3g025486 | LOC_Os03g52080 | Os03g0730700 | - | Detail |
| C1H3g25117 | 3:28,077,259-28,100,391 | - | C2H3g15444 | CX3g030109 | LOC_Os03g52090 | Os03g0730800 | - | Detail |
| C1H3g02569 | 3:28,102,926-28,106,003 | + | C2H3g30622 | CX3g024994 | LOC_Os03g52120 | Os03g0731050 | - | Detail |
| C1H3g13296 | 3:28,106,797-28,107,821 | + | C2H3g14888 | CX3g027975 | LOC_Os03g52130 | Os03g0731100 | - | Detail |
| C1H3g30965 | 3:28,112,640-28,122,364 | + | C2H3g15813 | CX3g026280 | LOC_Os03g52150 | Os03g0731500 | - | Detail |
| C1H3g29781 | 3:28,122,823-28,124,378 | + | C2H3g18334 | CX3g025632 | LOC_Os03g52160 | Os03g0731800 | - | Detail |
| C1H3g24484 | 3:28,124,488-28,127,800 | - | C2H3g17469 | CX3g027993 | LOC_Os03g52170 | Os03g0731900 | OsHMBPP, LAS1, LAS1/OsHMBPP | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H9g09442 | 9:16,400,420-16,402,816 | - | C1H9g29051 | CX9g055341 | LOC_Os09g32610 | Os09g0502900 | - | Detail |
| C2H9g03067 | 9:16,407,616-16,408,962 | + | C1H9g27895 | CX9g055636 | LOC_Os09g32620 | Os09g0503000 | - | Detail |
| C2H9g26652 | 9:16,411,252-16,413,800 | + | C1H9g22567 | CX9g058014 | LOC_Os09g32640 | Os09g0503100 | - | Detail |
| C2H9g20718 | 9:16,414,863-16,419,722 | + | C1H9g12902 | CX9g055869 | LOC_Os09g32650 | Os09g0503400 | - | Detail |
| C2H9g18609 | 9:16,421,577-16,423,158 | - | C1H9g11041 | CX9g055215 | LOC_Os09g32660 | Os09g0503700 | - | Detail |
| C2H9g25649 | 9:16,431,637-16,434,336 | - | C1H9g11647 | CX9g055341 | LOC_Os09g32410 | Os09g0503700 | - | Detail |
| C2H9g28585 | 9:16,451,947-16,455,777 | + | C1H9g15461 | CX9g056666 | LOC_Os09g32680 | Os09g0504400 | OsCycC | Detail |
| C2H9g18502 | 9:16,456,999-16,459,212 | - | C1H9g24869 | CX9g055615 | LOC_Os09g32690 | Os09g0504700 | - | Detail |
| C2H9g07035 | 9:16,460,332-16,462,127 | + | C1H9g01645 | CX9g055065 | LOC_Os09g32700 | Os09g0504800 | - | Detail |
| C2H9g25198 | 9:16,462,746-16,465,789 | - | C1H9g24207 | CX9g057729 | LOC_Os09g32710 | Os09g0504900 | - | Detail |
| C2H9g10527 | 9:16,476,400-16,481,972 | - | C1H9g18162 | CX9g056102 | LOC_Os09g32740 | Os09g0505100 | OsLMP1 | Detail |
| C2H9g09607 | 9:16,489,666-16,493,600 | + | C1H9g22641 | CX9g056649 | LOC_Os09g32750 | Os09g0505200 | - | Detail |
| C2H9g21366 | 9:16,495,183-16,498,492 | - | C1H9g03482 | CX9g055713 | LOC_Os09g32760 | Os09g0505300 | - | Detail |
| C2H9g12699 | 9:16,502,384-16,505,020 | - | C1H9g24687 | CX9g056695 | LOC_Os09g32770 | Os09g0505400 | - | Detail |
| C2H9g11822 | 9:16,508,288-16,511,473 | + | C1H9g26041 | CX9g056682 | LOC_Os09g32800 | Os09g0505600 | - | Detail |
| C2H9g18360 | 9:16,512,741-16,516,792 | + | - | CX9g057981 | LOC_Os09g32810 | Os09g0505700 | - | Detail |
| C2H9g24671 | 9:16,517,783-16,523,355 | + | C1H9g21392 | CX9g056458 | LOC_Os09g32820 | Os09g0505800 | - | Detail |
| C2H9g08120 | 9:16,525,366-16,528,867 | + | C1H9g14148 | CX9g057123 | LOC_Os09g32830 | Os09g0505900 | - | Detail |
| C2H9g17089 | 9:16,529,292-16,533,858 | - | C1H9g17584 | CX9g056383 | LOC_Os09g32840 | Os09g0506000 | - | Detail |
| C2H9g19754 | 9:16,534,513-16,535,606 | - | C1H9g11480 | CX9g056383 | LOC_Os09g32850 | Os09g0506000 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |