| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g07073 | 3:27,325,420-27,328,249 | - | C2H3g02088 | CX3g028369 | LOC_Os03g51010 | Os03g0719400 | - | Detail |
| C1H3g18727 | 3:27,333,598-27,340,771 | - | C2H3g19826 | CX3g030509 | LOC_Os03g51020 | Os03g0719500 | - | Detail |
| C1H3g17828 | 3:27,343,601-27,351,321 | - | C2H3g21521 | CX3g025792 | LOC_Os03g51030 | Os03g0719800 | PHYA, phyA, PHYA* (phyA), PHYA*, Phya, PHY18, phy 18, OsPHYA | Detail |
| C1H3g02668 | 3:27,355,410-27,357,660 | - | C2H3g23219 | CX3g027542 | LOC_Os03g51040 | Os03g0719850 | - | Detail |
| C1H3g04945 | 3:27,359,144-27,362,873 | - | C2H3g09005 | CX3g029279 | LOC_Os03g51050 | Os03g0719900 | - | Detail |
| C1H3g17570 | 3:27,375,407-27,383,857 | + | C2H3g13711 | CX3g026462 | LOC_Os03g51080 | Os03g0720300 | - | Detail |
| C1H3g14449 | 3:27,387,267-27,388,529 | + | C2H3g28128 | CX3g027259 | LOC_Os03g51090 | Os03g0720400 | - | Detail |
| C1H3g00523 | 3:27,390,529-27,391,045 | + | C2H3g18749 | CX11g011204 | LOC_Os11g37260 | - | - | Detail |
| C1H3g18844 | 3:27,405,048-27,407,087 | + | C2H3g28128 | CX3g027259 | LOC_Os03g51090 | Os03g0720400 | - | Detail |
| C1H3g11639 | 3:27,407,361-27,409,515 | + | C2H3g30385 | - | - | - | - | Detail |
| C1H3g16507 | 3:27,419,162-27,420,717 | + | C2H3g13711 | CX3g026462 | LOC_Os03g51080 | Os03g0720300 | - | Detail |
| C1H3g27041 | 3:27,437,250-27,438,670 | + | C2H3g08962 | CX3g028983 | LOC_Os03g51110 | Os03g0720800 | Os2R_MYB41 | Detail |
| C1H3g28337 | 3:27,449,102-27,471,954 | + | C2H3g28611 | CX3g027802 | LOC_Os03g51140 | Os03g0721200 | - | Detail |
| C1H3g18786 | 3:27,472,007-27,474,325 | - | C2H3g23618 | CX3g029589 | LOC_Os03g51150 | Os03g0721300 | - | Detail |
| C1H3g12607 | 3:27,475,365-27,478,326 | - | C2H3g12002 | CX3g029088 | LOC_Os03g51160 | Os03g0721400 | - | Detail |
| C1H3g28641 | 3:27,482,631-27,485,384 | - | C2H3g26307 | CX3g025020 | LOC_Os03g51180 | - | - | Detail |
| C1H3g29102 | 3:27,493,327-27,493,841 | + | C2H3g16842 | CX3g026654 | LOC_Os03g51200 | Os03g0279200 | - | Detail |
| C1H3g04974 | 3:27,497,998-27,503,722 | + | C2H3g24429 | CX3g029940 | LOC_Os03g51220 | Os03g0722100 | - | Detail |
| C1H3g07846 | 3:27,506,022-27,512,236 | + | C2H3g01976 | CX3g030800 | LOC_Os03g51230 | Os03g0722400 | OsDDM1b | Detail |
| C1H3g19413 | 3:27,513,846-27,516,277 | + | C2H3g17168 | CX3g030963 | LOC_Os03g51240 | Os03g0722500 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H3g07018 | 3:4,064,168-4,067,247 | - | C1H3g25212 | CX3g030934 | LOC_Os03g09020 | Os03g0189600 | - | Detail |
| C2H3g15705 | 3:4,076,995-4,077,741 | + | C1H3g17759 | CX3g030414 | LOC_Os03g09045 | Os03g0190000 | - | Detail |
| C2H3g04200 | 3:4,079,357-4,082,330 | - | C1H3g10345 | CX3g029542 | LOC_Os03g09060 | Os03g0190100 | - | Detail |
| C2H3g20959 | 3:4,084,964-4,088,393 | - | C1H3g09287 | CX3g031332 | LOC_Os03g09070 | Os03g0190300 | - | Detail |
| C2H3g15387 | 3:4,095,573-4,099,565 | - | C1H3g05709 | CX3g031087 | LOC_Os03g09080 | Os03g0190800 | - | Detail |
| C2H3g01761 | 3:4,101,326-4,104,401 | - | C1H3g10832 | CX3g028138 | LOC_Os03g09090 | Os03g0190900 | - | Detail |
| C2H3g07809 | 3:4,106,752-4,114,670 | - | C1H3g14873 | CX3g029059 | LOC_Os03g09100 | Os03g0191000 | SCT1 | Detail |
| C2H3g15678 | 3:4,117,966-4,121,511 | - | C1H3g14873 | CX3g025401 | LOC_Os03g09110 | Os03g0191100 | - | Detail |
| C2H3g21550 | 3:4,126,940-4,128,168 | - | C1H3g14671 | CX3g026471 | LOC_Os03g09120 | Os03g0191200 | - | Detail |
| C2H3g28466 | 3:4,139,871-4,142,219 | + | C1H3g14495 | CX3g028388 | LOC_Os03g09140 | Os03g0191400 | OsRab6B2, OsRab6a | Detail |
| C2H3g00905 | 3:4,144,938-4,148,814 | - | C1H3g25069 | CX3g027338 | LOC_Os03g09150 | Os03g0191700 | - | Detail |
| C2H3g19135 | 3:4,151,128-4,151,937 | + | C1H3g30469 | CX3g029377 | LOC_Os03g09160 | Os03g0191800 | - | Detail |
| C2H3g16037 | 3:4,157,728-4,158,624 | - | C1H3g18769 | CX3g028606 | LOC_Os03g09170 | Os03g0191900 | - | Detail |
| C2H3g14345 | 3:4,163,160-4,166,595 | - | C1H3g13867 | CX3g025223 | LOC_Os03g09180 | Os03g0192000 | - | Detail |
| C2H3g00220 | 3:4,167,033-4,169,737 | + | C1H3g13109 | CX3g026535 | LOC_Os03g09190 | Os03g0192100 | - | Detail |
| C2H3g04064 | 3:4,169,895-4,172,790 | - | C1H3g24183 | CX3g029681 | LOC_Os03g09200 | Os03g0192300 | - | Detail |
| C2H3g23777 | 3:4,183,683-4,186,314 | - | C1H3g22125 | CX3g026243 | LOC_Os03g09210 | Os03g0192400 | - | Detail |
| C2H3g14962 | 3:4,191,655-4,196,800 | + | C1H3g21423 | CX3g025389 | LOC_Os03g09220 | Os03g0192500 | PP45, OsPP45, BIPP2C1 | Detail |
| C2H3g01547 | 3:4,197,442-4,198,720 | - | C1H3g29007 | CX3g029005 | LOC_Os03g09230 | Os03g0192600 | - | Detail |
| C2H3g00630 | 3:4,201,731-4,206,113 | - | C1H3g26414 | CX3g028884 | LOC_Os03g09250 | Os03g0192700 | INO1, RINO1 | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |