| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g07073 | 3:27,325,420-27,328,249 | - | C2H3g02088 | CX3g028369 | LOC_Os03g51010 | Os03g0719400 | - | Detail |
| C1H3g18727 | 3:27,333,598-27,340,771 | - | C2H3g19826 | CX3g030509 | LOC_Os03g51020 | Os03g0719500 | - | Detail |
| C1H3g17828 | 3:27,343,601-27,351,321 | - | C2H3g21521 | CX3g025792 | LOC_Os03g51030 | Os03g0719800 | PHYA, phyA, PHYA* (phyA), PHYA*, Phya, PHY18, phy 18, OsPHYA | Detail |
| C1H3g02668 | 3:27,355,410-27,357,660 | - | C2H3g23219 | CX3g027542 | LOC_Os03g51040 | Os03g0719850 | - | Detail |
| C1H3g04945 | 3:27,359,144-27,362,873 | - | C2H3g09005 | CX3g029279 | LOC_Os03g51050 | Os03g0719900 | - | Detail |
| C1H3g17570 | 3:27,375,407-27,383,857 | + | C2H3g13711 | CX3g026462 | LOC_Os03g51080 | Os03g0720300 | - | Detail |
| C1H3g14449 | 3:27,387,267-27,388,529 | + | C2H3g28128 | CX3g027259 | LOC_Os03g51090 | Os03g0720400 | - | Detail |
| C1H3g00523 | 3:27,390,529-27,391,045 | + | C2H3g18749 | CX11g011204 | LOC_Os11g37260 | - | - | Detail |
| C1H3g18844 | 3:27,405,048-27,407,087 | + | C2H3g28128 | CX3g027259 | LOC_Os03g51090 | Os03g0720400 | - | Detail |
| C1H3g11639 | 3:27,407,361-27,409,515 | + | C2H3g30385 | - | - | - | - | Detail |
| C1H3g16507 | 3:27,419,162-27,420,717 | + | C2H3g13711 | CX3g026462 | LOC_Os03g51080 | Os03g0720300 | - | Detail |
| C1H3g27041 | 3:27,437,250-27,438,670 | + | C2H3g08962 | CX3g028983 | LOC_Os03g51110 | Os03g0720800 | Os2R_MYB41 | Detail |
| C1H3g28337 | 3:27,449,102-27,471,954 | + | C2H3g28611 | CX3g027802 | LOC_Os03g51140 | Os03g0721200 | - | Detail |
| C1H3g18786 | 3:27,472,007-27,474,325 | - | C2H3g23618 | CX3g029589 | LOC_Os03g51150 | Os03g0721300 | - | Detail |
| C1H3g12607 | 3:27,475,365-27,478,326 | - | C2H3g12002 | CX3g029088 | LOC_Os03g51160 | Os03g0721400 | - | Detail |
| C1H3g28641 | 3:27,482,631-27,485,384 | - | C2H3g26307 | CX3g025020 | LOC_Os03g51180 | - | - | Detail |
| C1H3g29102 | 3:27,493,327-27,493,841 | + | C2H3g16842 | CX3g026654 | LOC_Os03g51200 | Os03g0279200 | - | Detail |
| C1H3g04974 | 3:27,497,998-27,503,722 | + | C2H3g24429 | CX3g029940 | LOC_Os03g51220 | Os03g0722100 | - | Detail |
| C1H3g07846 | 3:27,506,022-27,512,236 | + | C2H3g01976 | CX3g030800 | LOC_Os03g51230 | Os03g0722400 | OsDDM1b | Detail |
| C1H3g19413 | 3:27,513,846-27,516,277 | + | C2H3g17168 | CX3g030963 | LOC_Os03g51240 | Os03g0722500 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H9g03868 | 9:19,338,728-19,340,668 | + | C1H9g22287 | CX9g057720 | LOC_Os09g39560 | Os09g0569100 | - | Detail |
| C2H9g00291 | 9:19,343,889-19,348,775 | + | C1H9g14979 | CX9g057873 | LOC_Os09g39570 | Os09g0569200 | - | Detail |
| C2H9g21708 | 9:19,348,729-19,352,131 | - | C1H9g21337 | CX9g056948 | LOC_Os09g39580 | Os09g0569300 | - | Detail |
| C2H9g03901 | 9:19,352,624-19,359,580 | - | C1H9g00926 | CX9g054868 | LOC_Os09g39590 | Os09g0569400 | - | Detail |
| C2H9g04048 | 9:19,359,933-19,361,372 | + | C1H9g13772 | CX9g055933 | LOC_Os09g39594 | Os09g0569450 | - | Detail |
| C2H9g14401 | 9:19,368,389-19,373,139 | + | C1H9g28953 | CX9g055966 | LOC_Os09g39620 | Os09g0569800 | - | Detail |
| C2H9g02081 | 9:19,378,900-19,383,826 | + | C1H9g10272 | CX9g055596 | LOC_Os09g39640 | Os09g0570000 | - | Detail |
| C2H9g26603 | 9:19,384,983-19,388,885 | + | C1H9g00135 | CX9g055372 | LOC_Os09g39650 | Os09g0570100 | - | Detail |
| C2H9g05032 | 9:19,390,495-19,394,004 | + | C1H9g20201 | CX9g055018 | LOC_Os09g39660 | Os09g0570200 | - | Detail |
| C2H9g16473 | 9:19,394,363-19,398,146 | + | C1H9g00132 | CX9g057426 | LOC_Os09g39670 | Os09g0570300 | - | Detail |
| C2H9g16630 | 9:19,398,822-19,403,223 | + | C1H9g11225 | CX9g055288 | LOC_Os09g39680 | Os09g0570400 | OsPHT4;4 | Detail |
| C2H9g09981 | 9:19,405,071-19,409,105 | + | C1H9g00104 | CX9g056911 | LOC_Os09g39690 | Os09g0570500 | - | Detail |
| C2H9g17141 | 9:19,409,913-19,414,200 | + | C1H9g21911 | CX9g055103 | LOC_Os09g39700 | Os09g0570600 | - | Detail |
| C2H9g29494 | 9:19,423,068-19,427,627 | - | C1H9g27323 | CX9g057522 | LOC_Os09g39740 | Os09g0570900 | - | Detail |
| C2H9g25303 | 9:19,429,857-19,431,658 | - | C1H9g16876 | CX9g057568 | LOC_Os09g39750 | Os09g0571000 | - | Detail |
| C2H9g19104 | 9:19,435,369-19,436,247 | - | C1H9g04184 | CX9g057734 | LOC_Os09g39770 | Os09g0571200 | OsC2DP | Detail |
| C2H9g29216 | 9:19,439,248-19,442,076 | - | C1H9g20893 | CX9g055064 | LOC_Os09g39790 | Os09g0571500 | - | Detail |
| C2H9g21329 | 9:19,469,484-19,473,360 | + | C1H9g22672 | CX9g056110 | LOC_Os09g39870 | Os09g0572200 | - | Detail |
| C2H9g18767 | 9:19,478,767-19,482,538 | - | C1H9g08753 | CX9g055330 | LOC_Os09g39910 | Os09g0572400 | - | Detail |
| C2H9g12647 | 9:19,485,838-19,489,483 | + | C1H9g04675 | CX9g056882 | LOC_Os09g39920 | Os09g0572500 | OsCslA12, OsMnS | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |