| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g31580 | 3:27,073,975-27,078,054 | - | C2H3g10695 | CX3g031057 | LOC_Os03g50560 | Os03g0713600 | PIBP1 | Detail |
| C1H3g19275 | 3:27,080,359-27,084,951 | + | C2H3g26349 | CX3g027124 | LOC_Os03g50570 | - | - | Detail |
| C1H3g08842 | 3:27,090,380-27,090,823 | + | C2H3g24928 | CX3g026388 | LOC_Os03g50590 | Os03g0714100 | - | Detail |
| C1H3g03025 | 3:27,096,874-27,101,383 | + | C2H3g05643 | CX3g025972 | LOC_Os03g50620 | Os03g0714400 | - | Detail |
| C1H3g05777 | 3:27,135,899-27,141,801 | + | C2H3g14544 | CX3g026364 | LOC_Os03g50730 | Os03g0715332 | - | Detail |
| C1H3g16416 | 3:27,141,969-27,151,372 | - | C2H3g21803 | CX3g026105 | LOC_Os03g50740 | Os03g0715500 | - | Detail |
| C1H3g22910 | 3:27,155,738-27,158,165 | + | C2H3g28319 | CX3g029092 | LOC_Os03g50760 | Os03g0715600 | - | Detail |
| C1H3g15466 | 3:27,170,402-27,173,393 | - | C2H3g20610 | CX3g028425 | LOC_Os03g50780 | Os03g0716200 | TIP3 | Detail |
| C1H3g13419 | 3:27,193,961-27,197,839 | - | C2H3g20165 | CX3g026031 | LOC_Os03g50810 | Os03g0717000 | OsTMK | Detail |
| C1H3g11111 | 3:27,204,441-27,206,760 | + | C2H3g17240 | CX3g030295 | LOC_Os03g50820 | Os03g0717200 | - | Detail |
| C1H3g17908 | 3:27,211,184-27,217,900 | - | C2H3g18569 | CX3g027168 | LOC_Os03g50850 | Os03g0717600 | - | Detail |
| C1H3g17527 | 3:27,226,256-27,232,312 | + | C2H3g26503 | CX3g030571 | LOC_Os03g50860 | Os03g0717700 | - | Detail |
| C1H3g18557 | 3:27,237,709-27,240,582 | + | C2H3g23833 | CX3g025771 | LOC_Os03g50870 | Os03g0717900 | - | Detail |
| C1H3g24319 | 3:27,241,007-27,244,411 | - | C2H3g04275 | CX3g031328 | LOC_Os03g50880 | Os03g0718000 | OASB2 | Detail |
| C1H3g01613 | 3:27,247,709-27,250,058 | + | C2H3g25200 | CX3g028008 | LOC_Os03g50885 | Os03g0718100 | - | Detail |
| C1H3g10193 | 3:27,251,331-27,256,594 | - | C2H3g25903 | - | - | - | - | Detail |
| C1H3g23147 | 3:27,276,626-27,279,326 | - | C2H3g13023 | CX3g028458 | LOC_Os03g50940 | Os03g0718600 | OsCOX11 | Detail |
| C1H3g22111 | 3:27,292,283-27,296,698 | - | C2H3g23829 | CX3g030965 | LOC_Os03g50970 | Os03g0719000 | - | Detail |
| C1H3g19794 | 3:27,304,558-27,312,123 | + | C2H3g02193 | CX3g028424 | LOC_Os03g50980 | Os03g0719100 | SIZ2, OsSIZ2 | Detail |
| C1H3g27091 | 3:27,314,156-27,321,766 | - | C2H3g22670 | CX3g025374 | LOC_Os03g51000 | Os03g0719300 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H5g00595 | 5:20,255,544-20,257,753 | + | C1H5g12778 | CX5g040097 | LOC_Os05g41010 | Os05g0489100 | - | Detail |
| C2H5g23469 | 5:20,260,244-20,261,460 | - | C1H5g22216 | - | LOC_Os05g41030 | Os05g0489200 | - | Detail |
| C2H5g15924 | 5:20,261,918-20,262,334 | - | C1H5g05615 | CX5g037795 | LOC_Os05g41030 | Os05g0489200 | - | Detail |
| C2H5g27372 | 5:20,265,804-20,269,075 | - | C1H5g29364 | CX5g037436 | LOC_Os05g41060 | Os05g0489600 | - | Detail |
| C2H5g09500 | 5:20,272,302-20,274,674 | + | C1H5g11382 | CX5g037252 | LOC_Os05g41070 | Os05g0489700 | HBF1, OsbZIP42 | Detail |
| C2H5g01943 | 5:20,276,334-20,276,600 | + | C1H5g00326 | CX5g039059 | - | Os05g0489750 | - | Detail |
| C2H5g05322 | 5:20,277,356-20,279,584 | - | C1H5g30374 | CX5g039132 | LOC_Os05g41080 | Os05g0489800 | OsCENH3 | Detail |
| C2H5g07453 | 5:20,280,953-20,284,731 | - | C1H5g17926 | CX5g038078 | LOC_Os05g41090 | Os05g0489900 | DMI3, OsDMI3, OsCCaMK1, OsCCaMK, OsCCAMK, CCAMK | Detail |
| C2H5g20839 | 5:20,285,634-20,287,613 | - | C1H5g27285 | CX5g037785 | LOC_Os05g41100 | Os05g0490000 | - | Detail |
| C2H5g02383 | 5:20,287,853-20,289,688 | + | C1H5g14042 | CX5g039362 | LOC_Os05g41110 | Os05g0490100 | - | Detail |
| C2H5g16191 | 5:20,290,572-20,296,794 | + | C1H5g00258 | CX5g038500 | LOC_Os05g41120 | Os05g0490200 | - | Detail |
| C2H5g27761 | 5:20,299,690-20,300,745 | - | C1H5g17707 | CX5g037621 | LOC_Os05g41130 | Os05g0490300 | - | Detail |
| C2H5g07017 | 5:20,308,897-20,315,355 | - | C1H5g17579 | CX5g039490 | LOC_Os05g41150 | Os05g0490400 | - | Detail |
| C2H5g07145 | 5:20,316,323-20,318,633 | - | C1H5g31086 | CX5g038921 | LOC_Os05g41166 | Os05g0490600 | CSA2 | Detail |
| C2H5g25171 | 5:20,322,902-20,328,726 | - | C1H5g16631 | CX5g037848 | LOC_Os05g41172 | Os05g0490700 | - | Detail |
| C2H5g06467 | 5:20,329,937-20,332,796 | - | C1H5g03177 | CX5g037157 | LOC_Os05g41180 | Os05g0490800 | - | Detail |
| C2H5g15902 | 5:20,336,078-20,336,922 | - | C1H5g04917 | - | LOC_Os05g41190 | Os05g0490900 | - | Detail |
| C2H5g03482 | 5:20,339,026-20,339,554 | - | C1H5g01262 | CX5g040781 | LOC_Os05g41200 | Os05g0491000 | OsCML9 | Detail |
| C2H5g27006 | 5:20,340,490-20,343,661 | - | C1H5g17633 | CX5g040781 | LOC_Os05g41210 | Os05g0491100 | - | Detail |
| C2H5g10562 | 5:20,347,115-20,349,730 | - | C1H5g22455 | CX5g040781 | LOC_Os05g41220 | Os05g0491200 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |