| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g19777 | 3:26,895,223-26,898,446 | + | C2H3g14633 | CX3g028611 | LOC_Os05g44786 | Os11g0671600 | - | Detail |
| C1H3g29848 | 3:26,903,088-26,908,355 | - | C2H3g20089 | CX3g028922 | LOC_Os03g50340 | Os03g0711400 | - | Detail |
| C1H3g20990 | 3:26,915,185-26,920,649 | - | C2H3g15122 | CX3g026077 | LOC_Os03g50350 | Os03g0711400 | - | Detail |
| C1H3g06912 | 3:26,927,033-26,927,841 | - | - | - | LOC_Os03g50355 | Os03g0711600 | - | Detail |
| C1H3g08172 | 3:26,930,496-26,932,578 | + | C2H3g12801 | CX3g029354 | LOC_Os03g50380 | Os03g0711700 | - | Detail |
| C1H3g12158 | 3:26,934,124-26,945,662 | - | C2H3g24276 | CX3g029539 | LOC_Os03g50390 | Os03g0711800 | - | Detail |
| C1H3g31143 | 3:26,949,583-26,952,748 | + | C2H3g25664 | CX3g027851 | LOC_Os03g50410 | Os03g0712000 | - | Detail |
| C1H3g31821 | 3:26,952,820-26,954,315 | + | C2H3g12487 | CX3g031085 | LOC_Os03g50420 | Os03g0712100 | - | Detail |
| C1H3g09256 | 3:26,955,337-26,957,991 | + | C2H3g02840 | CX3g026342 | LOC_Os03g50430 | Os03g0712200 | - | Detail |
| C1H3g16791 | 3:26,961,551-26,966,323 | + | C2H3g18082 | - | LOC_Os03g50440 | Os03g0712300 | - | Detail |
| C1H3g24688 | 3:26,975,223-26,978,411 | - | C2H3g09846 | CX3g027421 | LOC_Os03g50450 | Os03g0712400 | OsRLK902-1 | Detail |
| C1H3g05888 | 3:26,981,704-26,983,266 | - | - | CX3g028913 | LOC_Os03g50470 | Os03g0712600 | - | Detail |
| C1H3g19333 | 3:26,985,852-26,993,576 | + | C2H3g20542 | CX3g027913 | LOC_Os03g50480 | Os03g0712700 | - | Detail |
| C1H3g10958 | 3:27,008,890-27,012,130 | - | C2H3g05305 | CX3g026356 | LOC_Os03g50490 | Os03g0712800 | OsGS1;3 | Detail |
| C1H3g19170 | 3:27,027,879-27,032,933 | + | C2H3g15113 | CX3g031207 | LOC_Os03g50510 | Os03g0713000 | - | Detail |
| C1H3g19053 | 3:27,036,072-27,041,807 | + | C2H3g02418 | CX3g031036 | LOC_Os03g50520 | Os03g0713100 | OsDRP1C | Detail |
| C1H3g13877 | 3:27,041,968-27,042,941 | - | C2H3g24098 | CX3g026018 | - | Os03g0713200 | - | Detail |
| C1H3g21559 | 3:27,043,903-27,048,203 | - | C2H3g23445 | CX3g028182 | LOC_Os03g50540 | Os03g0713400 | - | Detail |
| C1H3g30817 | 3:27,062,963-27,064,018 | + | C2H3g16804 | CX3g028518 | LOC_Os03g50550 | Os03g0713500 | - | Detail |
| C1H3g28404 | 3:27,067,594-27,068,619 | + | C2H3g13293 | CX3g025056 | LOC_Os03g50550 | Os03g0713500 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H12g16031 | 12:4,495,209-4,495,847 | - | C1H12g00057 | CX12g018011 | - | - | - | Detail |
| C2H12g13338 | 12:4,504,009-4,509,180 | - | C1H12g21936 | CX12g015241 | LOC_Os12g09700 | Os12g0198700 | - | Detail |
| C2H12g07984 | 12:4,516,918-4,520,606 | + | C1H12g18620 | CX12g018163 | LOC_Os12g09710 | Os12g0198900 | - | Detail |
| C2H12g13398 | 12:4,522,686-4,525,643 | - | C1H12g20422 | CX12g016268 | LOC_Os12g09700 | Os12g0198700 | - | Detail |
| C2H12g09085 | 12:4,531,956-4,542,029 | - | C1H12g03660 | CX12g016763 | LOC_Os12g10460 | Os12g0199100 | - | Detail |
| C2H12g25382 | 12:4,561,839-4,565,485 | + | C1H12g18718 | - | - | - | - | Detail |
| C2H12g21993 | 12:4,568,789-4,571,070 | + | C1H12g29942 | CX12g015724 | LOC_Os12g10170 | Os12g0199500 | - | Detail |
| C2H12g02513 | 12:4,596,026-4,598,793 | - | C1H12g23734 | CX12g017268 | LOC_Os11g14670 | - | - | Detail |
| C2H12g06069 | 12:4,610,752-4,611,165 | - | C1H12g26851 | - | - | - | - | Detail |
| C2H12g23156 | 12:4,724,987-4,726,528 | + | C1H12g08099 | CX12g015438 | LOC_Os12g10140 | Os12g0202700 | - | Detail |
| C2H12g10521 | 12:4,727,388-4,728,439 | + | C1H12g25986 | CX12g015438 | LOC_Os12g10170 | Os12g0240900 | NOMT, OsNOMT, COMTL3, OsCOMTL3 | Detail |
| C2H12g28534 | 12:4,729,007-4,735,179 | - | C1H12g24838 | CX12g018391 | LOC_Os12g10180 | Os12g0202900 | - | Detail |
| C2H12g14596 | 12:4,736,631-4,738,688 | + | C1H12g13815 | CX12g015359 | LOC_Os12g10184 | Os12g0202850 | PGL12 | Detail |
| C2H12g19800 | 12:4,739,696-4,743,084 | + | C1H12g15070 | CX12g015359 | LOC_Os12g10190 | Os12g0203000 | - | Detail |
| C2H12g26432 | 12:4,744,095-4,746,553 | - | C1H12g07643 | CX12g015476 | LOC_Os12g10200 | Os12g0203100 | - | Detail |
| C2H12g29948 | 12:4,750,872-4,752,957 | + | C1H12g30565 | CX12g018695 | LOC_Os12g10220 | Os12g0203200 | - | Detail |
| C2H12g27282 | 12:4,780,000-4,780,482 | + | C1H12g14694 | CX12g017473 | LOC_Os12g10260 | Os12g0204000 | - | Detail |
| C2H12g03169 | 12:4,781,447-4,786,377 | + | C1H12g14346 | CX12g017473 | LOC_Os12g10270 | Os12g0632401 | - | Detail |
| C2H12g06639 | 12:4,791,041-4,794,004 | + | C1H12g25521 | CX12g015937 | LOC_Os12g10280 | Os12g0204100 | - | Detail |
| C2H12g05093 | 12:4,816,407-4,818,311 | - | C1H12g12793 | CX12g017749 | LOC_Os12g10330 | Os12g0204600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |