| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g01922 | 3:26,743,428-26,745,653 | - | C2H3g11307 | CX3g030763 | LOC_Os03g50090 | Os03g0708600 | - | Detail |
| C1H3g14178 | 3:26,746,986-26,752,073 | - | C2H3g20554 | CX3g025191 | LOC_Os03g50100 | Os03g0708700 | - | Detail |
| C1H3g04028 | 3:26,761,227-26,762,360 | - | C2H3g02008 | CX3g026061 | LOC_Os03g50110 | Os03g0708800 | - | Detail |
| C1H3g25650 | 3:26,764,606-26,768,838 | + | C2H3g01107 | CX3g026724 | LOC_Os03g50120 | Os03g0708900 | - | Detail |
| C1H3g26419 | 3:26,770,835-26,772,770 | - | C2H3g12581 | CX3g026549 | - | Os03g0709000 | - | Detail |
| C1H3g00554 | 3:26,774,735-26,774,941 | - | C2H3g23367 | CX3g030849 | LOC_Os03g50140 | Os03g0709100 | OsUCL8 | Detail |
| C1H3g08833 | 3:26,775,033-26,775,239 | - | C2H3g12217 | CX3g030849 | LOC_Os03g50140 | Os03g0709100 | OsUCL8 | Detail |
| C1H3g00862 | 3:26,780,962-26,782,749 | - | C2H3g17990 | CX3g027687 | LOC_Os03g50160 | Os03g0709300 | - | Detail |
| C1H3g26800 | 3:26,804,791-26,806,092 | + | C2H3g22762 | CX3g031286 | LOC_Os03g50210 | Os03g0710000 | - | Detail |
| C1H3g31046 | 3:26,806,597-26,809,136 | - | C2H3g19621 | CX3g026541 | LOC_Os03g50220 | - | - | Detail |
| C1H3g04126 | 3:26,810,173-26,810,750 | - | C2H3g18554 | CX3g026477 | LOC_Os12g44330 | Os03g0789000 | OsCPK11 | Detail |
| C1H3g07148 | 3:26,814,366-26,815,461 | - | C2H3g09223 | CX3g026477 | LOC_Os03g50230 | Os03g0710100 | OsHOP2 | Detail |
| C1H3g05875 | 3:26,817,837-26,820,565 | + | C2H3g20376 | CX3g028078 | LOC_Os03g50250 | Os03g0710500 | - | Detail |
| C1H3g17966 | 3:26,824,271-26,825,550 | - | C2H3g06541 | CX3g029323 | LOC_Os03g50270 | Os03g0710600 | - | Detail |
| C1H3g12018 | 3:26,828,078-26,830,494 | - | C2H3g00310 | CX3g027946 | LOC_Os03g50280 | Os03g0710700 | - | Detail |
| C1H3g30860 | 3:26,837,279-26,841,045 | + | C2H3g13816 | CX3g029821 | LOC_Os03g50290 | Os03g0710800 | GF14f, SR14-3-3 | Detail |
| C1H3g01378 | 3:26,844,719-26,852,846 | + | C2H3g13830 | CX3g029660 | LOC_Os03g50300 | Os03g0710900 | - | Detail |
| C1H3g31233 | 3:26,858,798-26,861,216 | + | C2H3g07676 | CX3g028553 | LOC_Os03g50310 | Os03g0711100 | OsCOL10, OsBBX10, OsJ, OsCCT14 | Detail |
| C1H3g26509 | 3:26,861,572-26,876,891 | - | C2H3g02097 | CX3g031158 | LOC_Os03g50320 | Os03g0711200 | - | Detail |
| C1H3g08523 | 3:26,878,922-26,886,708 | - | C2H3g27257 | CX3g026863 | LOC_Os03g50330 | Os03g0711300 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H4g26723 | 4:27,124,698-27,125,142 | - | C1H4g13879 | CX4g031575 | LOC_Os04g52950 | Os04g0620600 | - | Detail |
| C2H4g15421 | 4:27,126,398-27,133,523 | + | C1H4g14650 | CX4g033766 | LOC_Os04g52960 | Os04g0620700 | OsNUC1-S | Detail |
| C2H4g09472 | 4:27,134,413-27,134,637 | + | C1H4g00045 | - | - | - | - | Detail |
| C2H4g07456 | 4:27,136,055-27,142,709 | + | C1H4g13741 | CX4g035632 | LOC_Os04g52970 | Os04g0620950 | - | Detail |
| C2H4g04192 | 4:27,149,114-27,152,410 | + | C1H4g13741 | CX4g035632 | LOC_Os04g52970 | Os04g0620950 | - | Detail |
| C2H4g06453 | 4:27,161,719-27,162,621 | + | C1H4g13741 | CX4g035632 | LOC_Os04g52970 | Os04g0620950 | - | Detail |
| C2H4g05552 | 4:27,163,238-27,165,981 | + | C1H4g19711 | CX4g031737 | LOC_Os04g52970 | Os04g0621300 | - | Detail |
| C2H4g28372 | 4:27,172,075-27,172,786 | + | C1H4g13741 | CX4g035632 | LOC_Os04g52970 | Os04g0620950 | - | Detail |
| C2H4g13757 | 4:27,178,561-27,179,819 | + | - | - | - | - | - | Detail |
| C2H4g15342 | 4:27,181,934-27,185,137 | + | C1H4g13741 | CX4g035632 | LOC_Os04g52970 | Os04g0620950 | - | Detail |
| C2H4g28716 | 4:27,190,533-27,195,904 | + | C1H4g13741 | CX4g035632 | LOC_Os04g53030 | Os04g0621500 | - | Detail |
| C2H4g25773 | 4:27,196,753-27,201,847 | + | C1H4g13741 | CX4g035632 | LOC_Os04g53040 | Os04g0620950 | - | Detail |
| C2H4g09962 | 4:27,204,533-27,205,312 | + | C1H4g21467 | CX4g035632 | LOC_Os04g53040 | Os04g0623066 | - | Detail |
| C2H4g10009 | 4:27,204,884-27,206,764 | - | C1H4g30712 | - | - | - | - | Detail |
| C2H4g19695 | 4:27,265,589-27,272,232 | + | C1H4g28793 | CX4g031650 | LOC_Os04g53160 | Os04g0623066 | - | Detail |
| C2H4g18934 | 4:27,274,707-27,275,128 | + | C1H4g12019 | CX4g034955 | - | - | - | Detail |
| C2H4g04467 | 4:27,295,964-27,298,655 | + | C1H4g15103 | CX4g034497 | LOC_Os04g53160 | Os04g0623066 | - | Detail |
| C2H4g25020 | 4:27,315,533-27,318,015 | + | C1H4g11379 | CX4g034503 | LOC_Os04g53120 | Os04g0622600 | Xa1 | Detail |
| C2H4g17376 | 4:27,329,992-27,331,969 | + | C1H4g28793 | CX4g034662 | LOC_Os04g53160 | Os04g0623066 | - | Detail |
| C2H4g13136 | 4:27,354,474-27,359,579 | + | C1H4g15103 | CX4g034662 | LOC_Os04g53160 | Os04g0623066 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |