| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g05707 | 3:26,222,167-26,226,157 | + | C2H3g17436 | CX3g027914 | LOC_Os03g49260 | Os03g0699700 | Osr9-LOX1 | Detail |
| C1H3g00070 | 3:26,276,000-26,281,263 | + | C2H3g05028 | CX3g026782 | LOC_Os03g49350 | Os03g0700400 | LOX-3 | Detail |
| C1H3g28644 | 3:26,295,127-26,301,411 | + | C2H3g00658 | CX3g026204 | LOC_Os03g49380 | Os03g0700700 | - | Detail |
| C1H3g00971 | 3:26,304,817-26,312,495 | + | C2H3g05258 | CX3g025372 | LOC_Os03g49400 | Os03g0700800 | - | Detail |
| C1H3g06905 | 3:26,317,358-26,325,881 | + | C2H3g25047 | CX3g029939 | LOC_Os03g49420 | Os03g0701000 | - | Detail |
| C1H3g16586 | 3:26,327,773-26,330,403 | - | C2H3g16404 | CX3g025036 | LOC_Os03g49430 | Os03g0701100 | - | Detail |
| C1H3g02438 | 3:26,331,306-26,334,484 | + | C2H3g29777 | CX3g031052 | LOC_Os03g49440 | Os03g0701200 | - | Detail |
| C1H3g07329 | 3:26,336,667-26,342,114 | + | C2H3g02417 | CX3g025970 | LOC_Os03g49464 | Os03g0701300 | - | Detail |
| C1H3g30968 | 3:26,344,592-26,345,705 | + | C2H3g02951 | CX3g026197 | - | - | - | Detail |
| C1H3g23591 | 3:26,350,081-26,353,417 | - | C2H3g12750 | CX3g027768 | LOC_Os03g49485 | Os03g0701600 | - | Detail |
| C1H3g03877 | 3:26,362,085-26,366,534 | - | C2H3g06305 | CX3g028834 | LOC_Os03g49500 | Os03g0701700 | - | Detail |
| C1H3g05492 | 3:26,372,353-26,378,831 | + | C2H3g14249 | CX3g030270 | LOC_Os03g49510 | Os03g0701800 | - | Detail |
| C1H3g29237 | 3:26,378,982-26,383,022 | - | C2H3g17325 | CX3g025317 | LOC_Os03g49520 | Os03g0701900 | - | Detail |
| C1H3g26019 | 3:26,392,572-26,394,046 | - | C2H3g13892 | CX3g029512 | LOC_Os03g49524 | Os03g0702000 | - | Detail |
| C1H3g02000 | 3:26,398,510-26,399,928 | + | C2H3g03163 | CX3g030273 | LOC_Os03g49550 | Os03g0702500 | - | Detail |
| C1H3g01842 | 3:26,419,738-26,424,496 | + | C2H3g18085 | CX3g029283 | LOC_Os03g49570 | Os03g0702700 | - | Detail |
| C1H3g13716 | 3:26,429,987-26,430,640 | - | C2H3g29993 | CX3g025714 | LOC_Os03g49590 | Os03g0702900 | - | Detail |
| C1H3g15421 | 3:26,430,939-26,435,492 | - | C2H3g11714 | CX3g027255 | LOC_Os03g49600 | Os03g0703000 | - | Detail |
| C1H3g29071 | 3:26,437,575-26,442,851 | - | C2H3g22582 | CX3g027190 | LOC_Os03g49610 | Os03g0703100 | - | Detail |
| C1H3g29286 | 3:26,443,242-26,448,622 | - | C2H3g04815 | CX3g028984 | LOC_Os03g49620 | Os03g0703200 | TMS10L | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g24769 | 1:6,366,071-6,369,837 | - | C1H1g19893 | CX1g004836 | LOC_Os01g12830 | Os01g0228600 | - | Detail |
| C2H1g00699 | 1:6,371,690-6,375,810 | - | C1H1g14653 | CX1g001640 | LOC_Os01g12840 | Os01g0228800 | - | Detail |
| C2H1g15617 | 1:6,384,169-6,392,026 | + | C1H1g26396 | CX1g006490 | LOC_Os01g12860 | Os01g0229000 | - | Detail |
| C2H1g03922 | 1:6,393,549-6,397,022 | - | C1H1g13199 | CX1g006720 | LOC_Os01g12870 | Os01g0229100 | - | Detail |
| C2H1g15811 | 1:6,397,263-6,397,838 | - | C1H1g07711 | - | - | - | - | Detail |
| C2H1g14330 | 1:6,397,298-6,405,488 | + | C1H1g15790 | CX1g003875 | LOC_Os01g12880 | Os01g0229200 | - | Detail |
| C2H1g05009 | 1:6,428,038-6,433,276 | + | C1H1g29443 | CX1g001622 | LOC_Os01g12890 | Os01g0229300 | CCP1, OsEMF1, DFO1, EMF1 | Detail |
| C2H1g10198 | 1:6,434,113-6,436,458 | - | C1H1g08244 | CX1g003284 | LOC_Os01g12900 | Os01g0229400 | RAC1, OsRAC1, OsRac1, Os Rac1 | Detail |
| C2H1g13210 | 1:6,442,722-6,444,692 | + | C1H1g30145 | CX1g003413 | LOC_Os01g12910 | Os01g0229500 | - | Detail |
| C2H1g03678 | 1:6,445,204-6,446,334 | + | C1H1g25208 | CX1g004766 | LOC_Os01g12920 | Os01g0229600 | - | Detail |
| C2H1g05903 | 1:6,447,103-6,453,778 | - | C1H1g01831 | CX1g005969 | LOC_Os01g12930 | Os01g0229700 | - | Detail |
| C2H1g00149 | 1:6,457,701-6,459,828 | - | C1H1g16126 | CX1g000942 | LOC_Os01g12940 | Os01g0229800 | - | Detail |
| C2H1g27747 | 1:6,473,366-6,481,075 | - | C1H1g06612 | CX1g003754 | LOC_Os01g13000 | Os01g0230200 | OsbHLH074 | Detail |
| C2H1g20912 | 1:6,512,790-6,516,964 | + | C1H1g30420 | CX1g006768 | LOC_Os01g13030 | Os01g0231000 | - | Detail |
| C2H1g03048 | 1:6,528,786-6,534,700 | + | C1H1g30529 | CX1g002350 | LOC_Os01g13060 | Os01g0231500 | - | Detail |
| C2H1g22889 | 1:6,539,651-6,541,263 | + | C1H1g25386 | CX1g004775 | LOC_Os01g13070 | Os01g0231600 | - | Detail |
| C2H1g30242 | 1:6,542,597-6,543,746 | - | C1H1g25919 | CX1g000758 | LOC_Os01g13080 | Os01g0231700 | OsP3B | Detail |
| C2H1g00380 | 1:6,544,772-6,548,593 | + | C1H1g30419 | CX1g004219 | LOC_Os01g13090 | Os01g0231800 | - | Detail |
| C2H1g07330 | 1:6,550,709-6,556,293 | + | C1H1g05372 | CX1g004219 | LOC_Os01g13100 | Os01g0231900 | - | Detail |
| C2H1g24942 | 1:6,559,697-6,560,533 | + | C1H1g03374 | CX1g004133 | LOC_Os01g13120 | Os01g0232000 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |