| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g27366 | 3:25,593,481-25,596,090 | + | C2H3g13044 | CX3g027834 | LOC_Os03g48010 | Os03g0684500 | - | Detail |
| C1H3g15233 | 3:25,596,794-25,598,680 | - | C2H3g22552 | CX3g025275 | LOC_Os03g48030 | Os03g0684700 | - | Detail |
| C1H3g05365 | 3:25,602,648-25,604,750 | + | C2H3g24042 | CX3g030044 | LOC_Os03g48040 | Os03g0685000 | OsFdC2, OsHDY1 | Detail |
| C1H3g13814 | 3:25,608,977-25,611,480 | + | C2H3g04933 | CX3g026303 | LOC_Os03g48050 | Os03g0685100 | - | Detail |
| C1H3g01967 | 3:25,628,711-25,631,971 | + | C2H3g27897 | CX3g027858 | LOC_Os03g48060 | Os03g0685300 | FLO19 | Detail |
| C1H3g16679 | 3:25,637,779-25,641,456 | - | C2H3g26335 | CX3g028901 | LOC_Os03g48080 | Os03g0685500 | - | Detail |
| C1H3g01229 | 3:25,641,900-25,645,954 | - | C2H3g24853 | CX3g029151 | LOC_Os03g48090 | Os03g0685600 | - | Detail |
| C1H3g02003 | 3:25,645,977-25,646,372 | - | C2H3g18835 | - | - | - | - | Detail |
| C1H3g30763 | 3:25,646,548-25,659,506 | + | C2H3g08146 | CX3g027759 | - | - | - | Detail |
| C1H3g16754 | 3:25,660,235-25,660,525 | + | - | - | LOC_Os03g48110 | Os03g0685900 | - | Detail |
| C1H3g31689 | 3:25,666,295-25,679,368 | - | C2H3g06193 | CX3g025545 | LOC_Os03g48140 | Os03g0686300 | - | Detail |
| C1H3g17077 | 3:25,685,933-25,689,140 | + | C2H3g15650 | CX3g025241 | LOC_Os03g48160 | Os03g0253100 | - | Detail |
| C1H3g31064 | 3:25,690,701-25,695,188 | + | C2H3g12008 | CX3g025276 | LOC_Os03g48170 | Os03g0686900 | FLO6 | Detail |
| C1H3g04074 | 3:25,695,859-25,701,417 | - | C2H3g19404 | CX3g025668 | LOC_Os03g51050 | Os03g0687000 | OsNPF2.4, NPF2.4, OsPTR2, PTR2 | Detail |
| C1H3g27780 | 3:25,713,193-25,717,194 | - | C2H3g17935 | CX3g029198 | LOC_Os03g48190 | Os03g0687200 | - | Detail |
| C1H3g31647 | 3:25,721,830-25,722,576 | - | C2H3g13078 | CX3g029222 | LOC_Os03g48220 | Os03g0687700 | - | Detail |
| C1H3g02479 | 3:25,724,849-25,725,295 | - | C2H3g02466 | CX3g025750 | LOC_Os03g48225 | Os03g0687800 | - | Detail |
| C1H3g12014 | 3:25,727,294-25,728,022 | - | C2H3g05793 | CX3g028579 | LOC_Os03g48235 | Os03g0688000 | - | Detail |
| C1H3g12256 | 3:25,730,050-25,730,676 | - | C2H3g06136 | CX3g029222 | LOC_Os03g48220 | Os03g0687700 | - | Detail |
| C1H3g24497 | 3:25,732,258-25,737,184 | + | C2H3g19874 | CX3g029090 | LOC_Os03g48260 | Os03g0688200 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H5g12125 | 5:3,223,946-3,225,231 | - | C1H5g10645 | CX5g039947 | LOC_Os05g07010 | Os05g0162800 | - | Detail |
| C2H5g12999 | 5:3,234,259-3,241,968 | + | C1H5g21362 | CX5g036788 | LOC_Os05g07030 | Os05g0163000 | - | Detail |
| C2H5g16153 | 5:3,242,486-3,246,747 | - | C1H5g28911 | CX5g037977 | LOC_Os05g07040 | Os05g0163100 | - | Detail |
| C2H5g03965 | 5:3,252,487-3,262,966 | - | C1H5g18411 | CX5g040279 | LOC_Os05g07050 | Os05g0163250 | - | Detail |
| C2H5g04935 | 5:3,266,640-3,269,161 | - | C1H5g11075 | CX5g037910 | LOC_Os05g07070 | Os05g0163400 | - | Detail |
| C2H5g00170 | 5:3,278,828-3,283,127 | - | C1H5g20466 | CX5g038895 | LOC_Os05g07090 | Os05g0163700 | - | Detail |
| C2H5g23603 | 5:3,291,893-3,293,426 | + | C1H5g09469 | CX5g038094 | LOC_Os05g07120 | Os05g0163900 | - | Detail |
| C2H5g20534 | 5:3,296,950-3,305,264 | + | C1H5g27443 | CX5g038741 | LOC_Os05g07130 | Os05g0164100 | - | Detail |
| C2H5g04936 | 5:3,313,229-3,319,281 | - | C1H5g31024 | CX5g037379 | LOC_Os05g07200 | Os05g0157500 | - | Detail |
| C2H5g19390 | 5:3,323,686-3,326,781 | - | C1H5g05167 | CX5g039548 | LOC_Os05g07210 | Os05g0164800 | - | Detail |
| C2H5g25207 | 5:3,329,107-3,335,492 | - | C1H5g24618 | CX5g037261 | LOC_Os05g07220 | Os05g0164900 | OsNRP4 | Detail |
| C2H5g22059 | 5:3,336,184-3,336,871 | - | C1H1g01233 | CX5g037870 | LOC_Os11g42360 | - | - | Detail |
| C2H5g18692 | 5:3,359,435-3,361,648 | + | C1H5g06265 | CX5g037840 | LOC_Os05g07260 | Os05g0165400 | - | Detail |
| C2H5g16692 | 5:3,362,642-3,364,832 | - | C1H5g20042 | CX5g038880 | LOC_Os05g07270 | Os05g0165450 | - | Detail |
| C2H5g15984 | 5:3,397,410-3,399,313 | - | C1H5g24502 | CX5g038084 | LOC_Os05g07300 | Os05g0166300 | SDRLK-35 | Detail |
| C2H5g14533 | 5:3,401,392-3,402,964 | + | - | - | - | Os05g0166450 | - | Detail |
| C2H5g05162 | 5:3,406,480-3,407,751 | - | C1H5g02115 | CX5g038084 | LOC_Os05g07300 | Os05g0166600 | SDRLK-36 | Detail |
| C2H5g29353 | 5:3,456,059-3,457,946 | + | C1H5g29782 | CX5g038409 | LOC_Os05g07600 | Os05g0167600 | - | Detail |
| C2H5g29905 | 5:3,472,357-3,472,817 | - | C1H5g13498 | CX5g040579 | LOC_Os05g07632 | Os05g0168300 | - | Detail |
| C2H5g25838 | 5:3,472,874-3,475,722 | - | C1H5g13498 | CX5g040579 | LOC_Os05g07632 | Os05g0168300 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |