| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g27366 | 3:25,593,481-25,596,090 | + | C2H3g13044 | CX3g027834 | LOC_Os03g48010 | Os03g0684500 | - | Detail |
| C1H3g15233 | 3:25,596,794-25,598,680 | - | C2H3g22552 | CX3g025275 | LOC_Os03g48030 | Os03g0684700 | - | Detail |
| C1H3g05365 | 3:25,602,648-25,604,750 | + | C2H3g24042 | CX3g030044 | LOC_Os03g48040 | Os03g0685000 | OsFdC2, OsHDY1 | Detail |
| C1H3g13814 | 3:25,608,977-25,611,480 | + | C2H3g04933 | CX3g026303 | LOC_Os03g48050 | Os03g0685100 | - | Detail |
| C1H3g01967 | 3:25,628,711-25,631,971 | + | C2H3g27897 | CX3g027858 | LOC_Os03g48060 | Os03g0685300 | FLO19 | Detail |
| C1H3g16679 | 3:25,637,779-25,641,456 | - | C2H3g26335 | CX3g028901 | LOC_Os03g48080 | Os03g0685500 | - | Detail |
| C1H3g01229 | 3:25,641,900-25,645,954 | - | C2H3g24853 | CX3g029151 | LOC_Os03g48090 | Os03g0685600 | - | Detail |
| C1H3g02003 | 3:25,645,977-25,646,372 | - | C2H3g18835 | - | - | - | - | Detail |
| C1H3g30763 | 3:25,646,548-25,659,506 | + | C2H3g08146 | CX3g027759 | - | - | - | Detail |
| C1H3g16754 | 3:25,660,235-25,660,525 | + | - | - | LOC_Os03g48110 | Os03g0685900 | - | Detail |
| C1H3g31689 | 3:25,666,295-25,679,368 | - | C2H3g06193 | CX3g025545 | LOC_Os03g48140 | Os03g0686300 | - | Detail |
| C1H3g17077 | 3:25,685,933-25,689,140 | + | C2H3g15650 | CX3g025241 | LOC_Os03g48160 | Os03g0253100 | - | Detail |
| C1H3g31064 | 3:25,690,701-25,695,188 | + | C2H3g12008 | CX3g025276 | LOC_Os03g48170 | Os03g0686900 | FLO6 | Detail |
| C1H3g04074 | 3:25,695,859-25,701,417 | - | C2H3g19404 | CX3g025668 | LOC_Os03g51050 | Os03g0687000 | OsNPF2.4, NPF2.4, OsPTR2, PTR2 | Detail |
| C1H3g27780 | 3:25,713,193-25,717,194 | - | C2H3g17935 | CX3g029198 | LOC_Os03g48190 | Os03g0687200 | - | Detail |
| C1H3g31647 | 3:25,721,830-25,722,576 | - | C2H3g13078 | CX3g029222 | LOC_Os03g48220 | Os03g0687700 | - | Detail |
| C1H3g02479 | 3:25,724,849-25,725,295 | - | C2H3g02466 | CX3g025750 | LOC_Os03g48225 | Os03g0687800 | - | Detail |
| C1H3g12014 | 3:25,727,294-25,728,022 | - | C2H3g05793 | CX3g028579 | LOC_Os03g48235 | Os03g0688000 | - | Detail |
| C1H3g12256 | 3:25,730,050-25,730,676 | - | C2H3g06136 | CX3g029222 | LOC_Os03g48220 | Os03g0687700 | - | Detail |
| C1H3g24497 | 3:25,732,258-25,737,184 | + | C2H3g19874 | CX3g029090 | LOC_Os03g48260 | Os03g0688200 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H3g17004 | 3:2,076,465-2,081,052 | - | C1H3g30626 | CX3g028566 | LOC_Os03g04940 | Os03g0143000 | - | Detail |
| C2H3g18870 | 3:2,082,975-2,085,326 | + | C1H3g27298 | CX3g025128 | LOC_Os03g04950 | Os03g0143100 | OsSDD1 | Detail |
| C2H3g00510 | 3:2,092,205-2,096,021 | - | C1H3g02218 | CX3g027250 | LOC_Os03g04960 | Os03g0143300 | - | Detail |
| C2H3g20943 | 3:2,096,727-2,101,875 | - | C1H3g27270 | CX3g029237 | LOC_Os03g04970 | Os03g0143400 | - | Detail |
| C2H3g27834 | 3:2,104,362-2,106,908 | + | C1H3g30154 | CX3g027862 | LOC_Os03g04980 | Os03g0143600 | - | Detail |
| C2H3g13054 | 3:2,109,272-2,113,550 | + | C1H3g31666 | CX3g030942 | LOC_Os03g04990 | Os03g0143700 | - | Detail |
| C2H3g11174 | 3:2,116,950-2,134,352 | + | C1H3g05683 | CX3g030855 | LOC_Os03g05020 | Os03g0143800 | LPL2 | Detail |
| C2H3g25262 | 3:2,134,601-2,135,425 | + | C1H3g03140 | CX3g030717 | LOC_Os03g05030 | Os03g0143900 | - | Detail |
| C2H3g25681 | 3:2,135,615-2,140,480 | - | C1H3g19361 | CX3g027941 | LOC_Os03g05040 | Os03g0144000 | MEICA1 | Detail |
| C2H3g07589 | 3:2,151,604-2,152,125 | + | - | CX3g027314 | - | - | - | Detail |
| C2H3g04857 | 3:2,153,866-2,155,380 | + | C1H3g21183 | CX3g030916 | LOC_Os03g05060 | Os03g0144300 | - | Detail |
| C2H3g23961 | 3:2,158,604-2,160,163 | + | C1H3g20447 | CX3g030916 | LOC_Os03g05070 | Os03g0144500 | - | Detail |
| C2H3g00158 | 3:2,166,034-2,167,851 | + | C1H3g06705 | CX3g030916 | LOC_Os03g05110 | Os03g0144800 | - | Detail |
| C2H3g20075 | 3:2,172,136-2,175,228 | - | C1H3g19955 | CX3g027788 | LOC_Os03g05140 | Os03g0145102 | - | Detail |
| C2H3g29665 | 3:2,181,942-2,182,694 | + | C1H3g20499 | CX3g025772 | LOC_Os03g05160 | Os03g0145200 | - | Detail |
| C2H3g24545 | 3:2,185,398-2,186,027 | + | C1H3g25509 | CX3g030193 | LOC_Os03g16890 | Os03g0692000 | - | Detail |
| C2H3g14474 | 3:2,188,922-2,191,093 | - | C1H3g14347 | CX3g027358 | - | Os03g0363100 | - | Detail |
| C2H3g21503 | 3:2,192,542-2,201,403 | - | C1H3g07337 | CX3g028191 | LOC_Os03g05200 | Os03g0145500 | - | Detail |
| C2H3g25507 | 3:2,204,579-2,205,847 | - | C1H3g27104 | CX3g025781 | LOC_Os03g05210 | Os03g0145600 | - | Detail |
| C2H3g25373 | 3:2,206,652-2,208,965 | - | C1H3g18616 | CX3g029694 | LOC_Os03g05260 | Os03g0145800 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |