| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g15008 | 3:25,380,391-25,382,918 | - | C2H3g05036 | CX3g027869 | LOC_Os03g47730 | Os03g0680700 | - | Detail |
| C1H3g11695 | 3:25,386,485-25,387,041 | - | - | - | LOC_Os03g47740 | - | - | Detail |
| C1H3g03715 | 3:25,387,095-25,393,085 | - | C2H3g11834 | CX3g029265 | LOC_Os03g47740 | Os03g0680800 | - | Detail |
| C1H3g12498 | 3:25,415,597-25,437,897 | + | C2H3g10722 | CX3g028531 | LOC_Os03g47760 | Os03g0681300 | - | Detail |
| C1H3g24402 | 3:25,438,866-25,443,544 | - | C2H3g08660 | CX3g025611 | LOC_Os03g47770 | Os03g0681400 | - | Detail |
| C1H3g21990 | 3:25,446,337-25,450,295 | + | C2H3g06154 | CX3g025413 | LOC_Os03g47780 | Os03g0681700 | OsWD40-81, OsLST8, LST8 | Detail |
| C1H3g03027 | 3:25,451,805-25,457,119 | - | C2H3g08631 | CX3g030716 | LOC_Os03g47790 | Os03g0681800 | - | Detail |
| C1H3g11959 | 3:25,468,236-25,472,054 | - | C2H3g29470 | CX3g030858 | LOC_Os03g47800 | Os03g0681900 | - | Detail |
| C1H3g05321 | 3:25,472,617-25,475,994 | - | C2H3g25886 | CX3g025153 | - | - | - | Detail |
| C1H3g19741 | 3:25,488,746-25,496,735 | - | C2H3g14407 | CX3g029458 | LOC_Os03g47820 | Os03g0682200 | - | Detail |
| C1H3g01296 | 3:25,514,058-25,515,446 | + | C2H3g07169 | CX3g029210 | LOC_Os03g47860 | Os03g0682900 | OsACT | Detail |
| C1H3g26805 | 3:25,522,398-25,523,171 | - | C2H3g28221 | CX3g030162 | LOC_Os03g47890 | Os03g0683200 | - | Detail |
| C1H3g30362 | 3:25,527,135-25,528,459 | - | C2H3g09855 | CX3g027958 | LOC_Os03g47896 | Os03g0683300 | - | Detail |
| C1H3g01955 | 3:25,534,161-25,551,193 | - | C2H3g01457 | - | - | Os03g0683816 | - | Detail |
| C1H3g30757 | 3:25,534,374-25,546,485 | + | C2H3g15375 | CX3g026415 | LOC_Os03g47930 | Os03g0138600 | - | Detail |
| C1H3g31733 | 3:25,547,703-25,552,026 | + | C2H3g26490 | CX3g030593 | LOC_Os03g47940 | Os03g0683800 | - | Detail |
| C1H3g20424 | 3:25,553,856-25,571,344 | - | C2H3g09499 | CX3g028427 | LOC_Os03g47949 | Os03g0683900 | - | Detail |
| C1H3g09827 | 3:25,573,493-25,579,102 | - | C2H3g10030 | CX3g029806 | LOC_Os03g47980 | Os03g0684100 | - | Detail |
| C1H3g13222 | 3:25,580,028-25,582,775 | + | C2H3g27014 | CX3g027899 | LOC_Os03g47990 | Os03g0684300 | - | Detail |
| C1H3g18256 | 3:25,584,274-25,590,281 | + | C2H3g26230 | CX3g029805 | LOC_Os03g48000 | Os03g0684400 | OsMGT3 | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g12729 | 1:33,028,778-33,029,629 | + | - | - | - | - | - | Detail |
| C2H1g08171 | 1:33,044,588-33,045,229 | + | C1H1g24698 | CX1g006898 | LOC_Os01g64620 | Os01g0866000 | - | Detail |
| C2H1g14468 | 1:33,062,097-33,065,472 | + | C1H1g21443 | CX1g006788 | LOC_Os01g64630 | Os01g0964133 | - | Detail |
| C2H1g26628 | 1:33,067,077-33,070,160 | + | C1H1g24361 | CX1g002061 | LOC_Os01g64650 | Os01g0866300 | - | Detail |
| C2H1g13692 | 1:33,071,806-33,074,738 | + | C1H1g19890 | CX1g002061 | LOC_Os01g64660 | Os01g0866400 | OscFBP1, MOC2 | Detail |
| C2H1g27654 | 1:33,074,943-33,076,275 | - | C1H1g06687 | CX1g003440 | LOC_Os01g64670 | Os01g0866500 | - | Detail |
| C2H1g02604 | 1:33,078,663-33,079,175 | - | C1H1g03251 | CX1g000969 | LOC_Os01g64680 | Os01g0866600 | - | Detail |
| C2H1g04946 | 1:33,079,993-33,081,615 | - | C1H1g20073 | CX1g003378 | LOC_Os01g64690 | Os01g0866700 | - | Detail |
| C2H1g24433 | 1:33,091,512-33,094,832 | + | C1H1g10677 | CX1g004424 | LOC_Os01g64700 | Os01g0866800 | - | Detail |
| C2H1g21915 | 1:33,098,085-33,106,160 | + | C1H1g07172 | CX1g005582 | - | Os01g0867100 | - | Detail |
| C2H1g21118 | 1:33,107,281-33,111,773 | + | C1H1g15015 | CX1g006694 | LOC_Os01g64720 | Os01g0867200 | - | Detail |
| C2H1g11092 | 1:33,112,440-33,115,002 | - | C1H1g09141 | CX1g000691 | LOC_Os01g64730 | Os01g0867300 | BZIP12, OsbZIP12, OsABF1 | Detail |
| C2H1g28759 | 1:33,119,935-33,129,326 | + | C1H1g05827 | CX1g004395 | LOC_Os01g64750 | Os01g0867600 | - | Detail |
| C2H1g15067 | 1:33,130,351-33,132,328 | + | C1H1g05655 | CX1g001594 | LOC_Os01g64760 | Os01g0867700 | - | Detail |
| C2H1g28339 | 1:33,134,001-33,137,688 | + | C1H1g18522 | CX1g006145 | LOC_Os01g64770 | Os01g0867800 | OsPTB1 | Detail |
| C2H1g30207 | 1:33,137,983-33,141,318 | - | C1H1g30751 | CX1g001130 | LOC_Os01g64780 | Os01g0867900 | - | Detail |
| C2H1g00754 | 1:33,143,439-33,145,825 | - | C1H1g06977 | CX1g003660 | LOC_Os01g64790 | Os01g0868000 | ERF99, OsEREBP2, EREBP2, OsERF#099, OsERF099, OsERF99, AP2/EREBP#080, AP2/EREBP80 | Detail |
| C2H1g16482 | 1:33,166,945-33,171,645 | - | C1H1g15696 | CX1g001548 | LOC_Os01g64810 | Os01g0868200 | - | Detail |
| C2H1g13803 | 1:33,175,093-33,185,351 | - | C1H1g06751 | CX1g000694 | LOC_Os01g64820 | Os01g0868300 | - | Detail |
| C2H1g17173 | 1:33,205,601-33,211,735 | - | C1H1g21599 | CX1g007144 | LOC_Os01g64870 | Os01g0869000 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |