| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g15008 | 3:25,380,391-25,382,918 | - | C2H3g05036 | CX3g027869 | LOC_Os03g47730 | Os03g0680700 | - | Detail |
| C1H3g11695 | 3:25,386,485-25,387,041 | - | - | - | LOC_Os03g47740 | - | - | Detail |
| C1H3g03715 | 3:25,387,095-25,393,085 | - | C2H3g11834 | CX3g029265 | LOC_Os03g47740 | Os03g0680800 | - | Detail |
| C1H3g12498 | 3:25,415,597-25,437,897 | + | C2H3g10722 | CX3g028531 | LOC_Os03g47760 | Os03g0681300 | - | Detail |
| C1H3g24402 | 3:25,438,866-25,443,544 | - | C2H3g08660 | CX3g025611 | LOC_Os03g47770 | Os03g0681400 | - | Detail |
| C1H3g21990 | 3:25,446,337-25,450,295 | + | C2H3g06154 | CX3g025413 | LOC_Os03g47780 | Os03g0681700 | OsWD40-81, OsLST8, LST8 | Detail |
| C1H3g03027 | 3:25,451,805-25,457,119 | - | C2H3g08631 | CX3g030716 | LOC_Os03g47790 | Os03g0681800 | - | Detail |
| C1H3g11959 | 3:25,468,236-25,472,054 | - | C2H3g29470 | CX3g030858 | LOC_Os03g47800 | Os03g0681900 | - | Detail |
| C1H3g05321 | 3:25,472,617-25,475,994 | - | C2H3g25886 | CX3g025153 | - | - | - | Detail |
| C1H3g19741 | 3:25,488,746-25,496,735 | - | C2H3g14407 | CX3g029458 | LOC_Os03g47820 | Os03g0682200 | - | Detail |
| C1H3g01296 | 3:25,514,058-25,515,446 | + | C2H3g07169 | CX3g029210 | LOC_Os03g47860 | Os03g0682900 | OsACT | Detail |
| C1H3g26805 | 3:25,522,398-25,523,171 | - | C2H3g28221 | CX3g030162 | LOC_Os03g47890 | Os03g0683200 | - | Detail |
| C1H3g30362 | 3:25,527,135-25,528,459 | - | C2H3g09855 | CX3g027958 | LOC_Os03g47896 | Os03g0683300 | - | Detail |
| C1H3g01955 | 3:25,534,161-25,551,193 | - | C2H3g01457 | - | - | Os03g0683816 | - | Detail |
| C1H3g30757 | 3:25,534,374-25,546,485 | + | C2H3g15375 | CX3g026415 | LOC_Os03g47930 | Os03g0138600 | - | Detail |
| C1H3g31733 | 3:25,547,703-25,552,026 | + | C2H3g26490 | CX3g030593 | LOC_Os03g47940 | Os03g0683800 | - | Detail |
| C1H3g20424 | 3:25,553,856-25,571,344 | - | C2H3g09499 | CX3g028427 | LOC_Os03g47949 | Os03g0683900 | - | Detail |
| C1H3g09827 | 3:25,573,493-25,579,102 | - | C2H3g10030 | CX3g029806 | LOC_Os03g47980 | Os03g0684100 | - | Detail |
| C1H3g13222 | 3:25,580,028-25,582,775 | + | C2H3g27014 | CX3g027899 | LOC_Os03g47990 | Os03g0684300 | - | Detail |
| C1H3g18256 | 3:25,584,274-25,590,281 | + | C2H3g26230 | CX3g029805 | LOC_Os03g48000 | Os03g0684400 | OsMGT3 | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H7g05786 | 7:4,212,789-4,215,761 | - | C1H7g00026 | CX7g048929 | LOC_Os07g08750 | Os07g0185000 | - | Detail |
| C2H7g20869 | 7:4,217,714-4,222,053 | - | C1H7g02270 | CX7g050270 | LOC_Os07g08760 | Os07g0185200 | - | Detail |
| C2H7g07159 | 7:4,227,217-4,227,744 | - | - | CX7g046271 | LOC_Os07g08770 | Os07g0185300 | - | Detail |
| C2H7g09570 | 7:4,241,011-4,247,301 | + | C1H7g21233 | CX7g050362 | LOC_Os07g08790 | Os07g0185432 | - | Detail |
| C2H7g02745 | 7:4,255,191-4,262,713 | + | C1H7g04399 | CX7g049699 | LOC_Os07g08810 | Os07g0185700 | - | Detail |
| C2H7g29336 | 7:4,266,820-4,269,949 | + | C1H7g17793 | CX7g048108 | LOC_Os07g08820 | Os07g0185800 | - | Detail |
| C2H7g13139 | 7:4,277,748-4,277,984 | - | C1H7g13541 | CX3g028966 | - | Os07g0185900 | - | Detail |
| C2H7g30045 | 7:4,287,679-4,289,641 | - | C1H7g15110 | CX7g047579 | LOC_Os07g08840 | Os07g0186000 | TRXH, trxh, Trx-H, OsTRXh1, OsTrxh1, Os1, OsTrx23, RPP13-1 | Detail |
| C2H7g25400 | 7:4,304,929-4,307,445 | - | C1H7g16802 | CX7g046706 | LOC_Os07g08860 | Os07g0186200 | SDRLK-SIK2, SIK2, OsSIK2, YK14 | Detail |
| C2H7g00916 | 7:4,311,780-4,314,422 | + | C1H7g31770 | CX7g047241 | LOC_Os07g08880 | Os07g0186400 | OsSHL1 | Detail |
| C2H7g24863 | 7:4,321,609-4,324,329 | + | C1H7g06257 | CX7g047241 | LOC_Os07g08890 | Os07g0186500 | - | Detail |
| C2H7g24828 | 7:4,327,031-4,333,206 | + | C1H7g14544 | CX7g047294 | LOC_Os07g08950 | Os07g0187200 | OsD-LDH2 | Detail |
| C2H7g12614 | 7:4,333,892-4,336,525 | - | C1H7g26846 | CX7g049916 | LOC_Os07g08960 | Os07g0549800 | - | Detail |
| C2H7g29149 | 7:4,337,669-4,341,516 | - | C1H7g27888 | CX7g048853 | LOC_Os07g08970 | Os07g0187400 | - | Detail |
| C2H7g29227 | 7:4,345,945-4,350,142 | + | C1H7g28076 | CX7g047749 | LOC_Os07g09000 | Os07g0187700 | PHF1, OsPHF1, OsWD40-137, OsSEC12 | Detail |
| C2H7g04045 | 7:4,360,372-4,362,273 | + | - | CX7g048678 | LOC_Os07g09010 | Os07g0187900 | - | Detail |
| C2H7g16781 | 7:4,367,052-4,377,051 | - | C1H7g18469 | CX7g050137 | LOC_Os07g09020 | Os07g0188000 | - | Detail |
| C2H7g28352 | 7:4,388,179-4,390,738 | + | C1H7g07933 | CX7g048045 | LOC_Os07g09040 | Os07g0188233 | - | Detail |
| C2H7g22140 | 7:4,392,080-4,393,178 | + | C1H7g27796 | CX7g049512 | LOC_Os07g09040 | Os07g0188266 | - | Detail |
| C2H7g15428 | 7:4,396,177-4,399,976 | + | C1H7g22647 | CX7g048570 | LOC_Os07g09050 | Os07g0188700 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |