| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g13118 | 3:25,046,504-25,048,967 | + | C2H3g29704 | CX3g029984 | LOC_Os03g47140 | Os03g0674700 | - | Detail |
| C1H3g07724 | 3:25,064,679-25,065,977 | - | C2H3g26505 | CX3g027378 | LOC_Os03g47190 | Os03g0675300 | - | Detail |
| C1H3g27197 | 3:25,095,431-25,095,840 | + | C2H3g22242 | CX3g028146 | LOC_Os03g47230 | Os03g0675600 | - | Detail |
| C1H3g14059 | 3:25,098,737-25,100,703 | + | C2H3g08949 | CX3g027716 | LOC_Os03g47240 | Os03g0675700 | - | Detail |
| C1H3g03770 | 3:25,122,455-25,123,501 | + | C2H3g30024 | CX3g025271 | LOC_Os03g47310 | Os03g0687700 | - | Detail |
| C1H3g06178 | 3:25,144,890-25,149,404 | - | C2H3g22513 | CX3g027660 | LOC_Os03g47360 | Os03g0677101 | - | Detail |
| C1H3g12211 | 3:25,151,231-25,152,096 | + | - | - | - | - | - | Detail |
| C1H3g22290 | 3:25,153,241-25,153,928 | + | C2H3g05304 | CX3g026799 | LOC_Os03g47370 | Os03g0663900 | EPAD1 | Detail |
| C1H3g17542 | 3:25,221,871-25,223,532 | + | C2H3g02490 | CX3g030452 | LOC_Os03g47500 | Os03g0678400 | - | Detail |
| C1H3g10676 | 3:25,243,268-25,244,394 | + | C2H3g13940 | CX3g029671 | LOC_Os03g47540 | Os03g0678950 | - | Detail |
| C1H3g02102 | 3:25,244,772-25,247,313 | - | C2H3g05697 | CX3g025861 | LOC_Os03g47550 | Os03g0679000 | - | Detail |
| C1H3g01260 | 3:25,252,492-25,254,444 | - | C2H3g07999 | - | LOC_Os03g47560 | Os03g0679100 | - | Detail |
| C1H3g29166 | 3:25,275,460-25,280,072 | - | C2H3g01612 | CX3g030786 | LOC_Os03g47580 | Os03g0679300 | - | Detail |
| C1H3g10616 | 3:25,286,739-25,295,091 | + | C2H3g01111 | CX3g031285 | LOC_Os03g47610 | Os03g0679700 | - | Detail |
| C1H3g20455 | 3:25,305,993-25,313,511 | + | C2H3g20804 | - | LOC_Os03g47640 | Os03g0680100 | - | Detail |
| C1H3g05229 | 3:25,315,895-25,323,966 | + | C2H3g30000 | - | LOC_Os03g47650 | Os03g0680200 | - | Detail |
| C1H3g13838 | 3:25,326,435-25,333,621 | + | C2H3g05641 | - | LOC_Os03g47686 | - | - | Detail |
| C1H3g07032 | 3:25,336,359-25,341,880 | + | C2H3g16174 | - | LOC_Os03g47686 | - | - | Detail |
| C1H3g02531 | 3:25,346,106-25,352,978 | + | C2H3g24906 | - | LOC_Os03g47693 | Os03g0680500 | - | Detail |
| C1H3g24845 | 3:25,370,491-25,379,311 | + | C2H3g27910 | CX1g004583 | LOC_Os03g47720 | Os03g0680600 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H12g17957 | 12:19,825,339-19,828,955 | - | - | - | - | - | - | Detail |
| C2H12g00857 | 12:19,836,424-19,839,405 | - | C1H12g12899 | CX12g015511 | LOC_Os12g38730 | Os12g0576300 | - | Detail |
| C2H12g17120 | 12:19,843,002-19,846,719 | - | C1H12g10259 | CX12g016341 | LOC_Os12g38750 | Os12g0576600 | - | Detail |
| C2H12g04894 | 12:19,854,539-19,857,748 | - | C1H12g21793 | CX12g017028 | LOC_Os12g38760 | Os12g0576700 | - | Detail |
| C2H12g26878 | 12:19,862,311-19,865,959 | - | C1H12g30700 | CX12g016600 | LOC_Os12g38770 | Os12g0576750 | PAP1B, OsPAP1b, NPP2, OsNPP2 | Detail |
| C2H12g26810 | 12:19,867,353-19,873,882 | - | C1H12g05519 | CX12g017595 | LOC_Os12g38780 | Os12g0576900 | - | Detail |
| C2H12g06238 | 12:19,875,946-19,878,170 | + | C1H12g22000 | CX12g017201 | LOC_Os12g38790 | Os12g0577000 | - | Detail |
| C2H12g22098 | 12:19,879,316-19,887,066 | + | C1H12g15638 | CX12g016939 | LOC_Os12g38800 | Os12g0577100 | - | Detail |
| C2H12g08874 | 12:19,892,972-19,894,012 | + | C1H12g30406 | CX12g017608 | LOC_Os12g38810 | Os12g0577200 | - | Detail |
| C2H12g22738 | 12:19,915,029-19,920,428 | + | C1H12g21439 | CX12g015208 | LOC_Os12g38850 | Os12g0577600 | - | Detail |
| C2H12g29158 | 12:19,921,945-19,924,327 | - | C1H12g00519 | CX12g018076 | LOC_Os12g38860 | Os12g0577700 | - | Detail |
| C2H12g06115 | 12:19,928,181-19,934,490 | - | C1H12g00369 | CX12g015574 | LOC_Os12g38870 | Os12g0577800 | - | Detail |
| C2H12g21149 | 12:19,948,275-19,950,104 | - | C1H12g31425 | CX12g017526 | LOC_Os12g38880 | Os12g0578000 | - | Detail |
| C2H12g11743 | 12:19,951,241-19,951,904 | + | C1H12g00225 | CX12g015487 | - | Os12g0530100 | - | Detail |
| C2H12g17013 | 12:19,954,198-19,958,515 | + | C1H12g19103 | CX12g016002 | LOC_Os12g38900 | Os12g0578200 | - | Detail |
| C2H12g27102 | 12:19,961,689-19,962,201 | + | C1H12g25977 | CX12g018018 | LOC_Os12g38910 | Os12g0578300 | - | Detail |
| C2H12g04289 | 12:19,962,292-19,966,033 | + | C1H12g25977 | CX12g018018 | LOC_Os12g38910 | Os12g0578300 | - | Detail |
| C2H12g06963 | 12:19,966,563-19,970,812 | + | C1H12g22422 | CX12g017088 | LOC_Os12g38920 | Os12g0578400 | - | Detail |
| C2H12g18495 | 12:19,971,081-19,976,738 | - | C1H12g15232 | CX12g016623 | LOC_Os12g38930 | Os12g0578500 | - | Detail |
| C2H12g09933 | 12:19,980,215-19,981,300 | - | C1H12g27740 | CX12g015550 | LOC_Os12g38940 | Os12g0578600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |