| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g01900 | 3:24,775,920-24,778,940 | - | C2H3g20768 | CX3g030404 | LOC_Os03g46660 | Os03g0669300 | - | Detail |
| C1H3g19071 | 3:24,784,668-24,786,240 | + | C2H3g23453 | CX3g029156 | LOC_Os03g46110 | Os03g0663900 | EPAD1 | Detail |
| C1H3g28800 | 3:24,789,046-24,790,599 | + | C2H3g11932 | CX3g027229 | LOC_Os03g46681 | Os03g0669600 | - | Detail |
| C1H3g21247 | 3:24,793,959-24,795,830 | - | C2H3g02411 | CX3g025010 | LOC_Os03g46690 | Os03g0669900 | - | Detail |
| C1H3g23850 | 3:24,796,112-24,801,862 | + | C2H3g12571 | CX3g026592 | LOC_Os03g46710 | Os03g0669800 | - | Detail |
| C1H3g12142 | 3:24,804,774-24,805,601 | - | C2H3g22513 | CX3g030274 | LOC_Os03g46720 | Os03g0669900 | - | Detail |
| C1H3g06816 | 3:24,807,809-24,812,058 | - | C2H3g10273 | CX3g027101 | LOC_Os03g46740 | Os03g0670100 | - | Detail |
| C1H3g09360 | 3:24,812,188-24,814,741 | + | C2H3g22557 | CX3g029731 | LOC_Os03g46750 | Os03g0670200 | - | Detail |
| C1H3g19284 | 3:24,821,749-24,822,829 | + | C2H3g25601 | CX3g026475 | LOC_Os03g46770 | Os03g0670700 | - | Detail |
| C1H3g25865 | 3:24,830,682-24,831,800 | + | C2H3g03723 | CX3g027784 | LOC_Os03g46790 | Os03g0671000 | - | Detail |
| C1H3g02739 | 3:24,858,955-24,863,514 | - | C2H3g18432 | CX3g027388 | LOC_Os03g46860 | Os03g0671800 | - | Detail |
| C1H3g03694 | 3:24,883,691-24,887,954 | - | C2H3g20149 | CX3g029841 | LOC_Os03g46910 | Os03g0672300 | OsPK8 | Detail |
| C1H3g13145 | 3:24,888,525-24,891,487 | - | C2H3g14853 | CX3g027713 | LOC_Os03g46920 | Os03g0672400 | - | Detail |
| C1H3g30917 | 3:24,900,206-24,900,936 | - | C2H3g26281 | CX3g025592 | LOC_Os03g46930 | Os03g0672500 | OsEPFL4 | Detail |
| C1H3g27862 | 3:24,904,548-24,913,504 | - | C2H3g15483 | CX3g025164 | LOC_Os03g46950 | Os03g0672700 | - | Detail |
| C1H3g17355 | 3:24,919,948-24,922,842 | + | C2H3g13483 | CX3g030146 | LOC_Os03g47010 | Os03g0672900 | OsXYN1, OsXyn1 | Detail |
| C1H3g13704 | 3:24,924,537-24,930,234 | - | C2H3g24723 | CX3g027200 | LOC_Os03g47016 | Os03g0673000 | - | Detail |
| C1H3g25759 | 3:24,953,373-24,960,215 | - | C2H3g09463 | CX3g026191 | LOC_Os03g47036 | Os03g0673500 | - | Detail |
| C1H3g00984 | 3:24,984,969-24,993,333 | - | C2H3g14597 | CX3g029508 | LOC_Os03g47070 | Os03g0673800 | - | Detail |
| C1H3g31854 | 3:25,015,842-25,021,446 | + | C2H3g00159 | CX3g029857 | LOC_Os03g47120 | Os03g0674300 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H4g25229 | 4:15,794,678-15,801,442 | + | C1H4g16826 | CX4g032461 | LOC_Os04g31330 | Os04g0382200 | EXO70F3, OsEXO70F3, OsExo70F3, OrysaF3_Exo70, OsExo70-F3, Exo70-F3 | Detail |
| C2H4g08291 | 4:15,804,992-15,811,254 | - | C1H4g08250 | CX4g033731 | LOC_Os04g31340 | Os04g0382300 | - | Detail |
| C2H4g21907 | 4:15,824,605-15,830,076 | + | C1H4g23640 | CX4g033213 | LOC_Os04g31390 | Os04g0382700 | - | Detail |
| C2H4g11523 | 4:15,836,091-15,839,486 | + | C1H4g29507 | CX4g031504 | LOC_Os04g31400 | Os04g0382800 | - | Detail |
| C2H4g17370 | 4:15,913,333-15,914,224 | + | - | - | - | - | - | Detail |
| C2H4g25485 | 4:15,931,863-15,933,250 | - | C1H4g27689 | CX4g031500 | LOC_Os04g31610 | Os04g0385600 | - | Detail |
| C2H4g09951 | 4:15,993,743-15,994,288 | + | C1H4g28157 | CX4g036232 | LOC_Os04g31670 | Os04g0386300 | - | Detail |
| C2H4g19704 | 4:16,003,534-16,005,941 | + | C1H4g01776 | CX4g034133 | LOC_Os04g31690 | Os04g0386500 | - | Detail |
| C2H4g09573 | 4:16,006,671-16,011,720 | - | C1H4g26815 | CX4g031487 | LOC_Os04g31700 | Os04g0386600 | - | Detail |
| C2H4g14766 | 4:16,012,438-16,013,706 | + | C1H4g21589 | CX4g036353 | LOC_Os04g31710 | Os04g0386700 | - | Detail |
| C2H4g24192 | 4:16,016,241-16,016,962 | - | C1H4g05500 | CX4g032722 | LOC_Os04g31730 | Os04g0386900 | - | Detail |
| C2H4g21209 | 4:16,039,785-16,039,997 | + | C1H4g13044 | CX4g034278 | LOC_Os04g31804 | Os04g0387300 | - | Detail |
| C2H4g17117 | 4:16,052,858-16,056,057 | + | C1H4g13813 | CX4g031777 | LOC_Os04g31790 | Os04g0387300 | - | Detail |
| C2H4g01397 | 4:16,061,878-16,080,060 | + | C1H4g20734 | CX4g031777 | LOC_Os04g31804 | Os04g0387300 | - | Detail |
| C2H4g11321 | 4:16,090,868-16,092,505 | + | C1H4g27855 | CX4g036291 | LOC_Os04g31880 | Os04g0388000 | - | Detail |
| C2H4g19348 | 4:16,122,233-16,129,901 | + | C1H4g11099 | CX4g033923 | LOC_Os04g31900 | Os04g0388500 | - | Detail |
| C2H4g18326 | 4:16,130,559-16,133,214 | - | C1H4g07543 | CX4g035641 | LOC_Os04g31910 | Os04g0388601 | - | Detail |
| C2H4g10433 | 4:16,140,780-16,145,134 | + | C1H4g09954 | CX4g031743 | LOC_Os04g31924 | Os04g0388700 | - | Detail |
| C2H4g06056 | 4:16,147,299-16,150,489 | + | C1H4g09321 | CX4g034542 | LOC_Os04g31940 | Os04g0388800 | - | Detail |
| C2H4g16596 | 4:16,152,682-16,155,851 | - | C1H4g17922 | CX4g034481 | LOC_Os04g31950 | Os04g0388900 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |