| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g21969 | 3:24,130,274-24,134,441 | + | C2H3g28256 | CX3g025231 | LOC_Os03g45320 | Os03g0655700 | - | Detail |
| C1H3g09602 | 3:24,137,352-24,138,990 | - | C2H3g14608 | CX3g027791 | LOC_Os03g45330 | Os03g0656000 | - | Detail |
| C1H3g03391 | 3:24,140,801-24,141,106 | - | C2H3g05055 | CX3g027791 | LOC_Os03g45330 | - | - | Detail |
| C1H3g13910 | 3:24,144,281-24,145,265 | - | C2H3g02509 | CX3g027133 | LOC_Os03g45340 | Os03g0656100 | - | Detail |
| C1H3g27575 | 3:24,146,309-24,147,654 | - | C2H3g14304 | CX3g025575 | LOC_Os03g45344 | Os03g0656201 | - | Detail |
| C1H3g27714 | 3:24,163,247-24,164,185 | - | C2H3g22997 | - | - | - | - | Detail |
| C1H3g10858 | 3:24,164,237-24,164,845 | - | C2H3g22826 | - | - | - | - | Detail |
| C1H3g06767 | 3:24,175,131-24,177,657 | + | C2H3g19499 | CX3g026686 | LOC_Os03g45390 | Os03g0656800 | - | Detail |
| C1H3g05969 | 3:24,177,942-24,181,683 | + | C2H3g07189 | CX3g028225 | LOC_Os03g45400 | Os03g0656900 | NUS1, V1, V<sub>1</sub> | Detail |
| C1H3g09225 | 3:24,183,479-24,186,795 | + | C2H3g10811 | CX3g030227 | LOC_Os03g45410 | Os03g0657000 | OsTBP2 | Detail |
| C1H3g18850 | 3:24,187,560-24,190,685 | - | C2H3g07935 | CX3g030290 | LOC_Os03g45420 | Os03g0657100 | - | Detail |
| C1H3g02435 | 3:24,200,053-24,200,562 | - | C2H3g03419 | CX3g029382 | LOC_Os03g45450 | Os03g0657400 | - | Detail |
| C1H3g24167 | 3:24,219,075-24,225,655 | - | C2H3g22074 | CX3g028666 | LOC_Os03g45619 | Os03g0658800 | - | Detail |
| C1H3g12006 | 3:24,226,530-24,227,437 | - | C2H3g00755 | CX3g028666 | LOC_Os03g45519 | Os03g0658000 | - | Detail |
| C1H3g24128 | 3:24,228,324-24,229,535 | - | C2H3g27863 | - | LOC_Os03g45528 | Os03g0658000 | - | Detail |
| C1H3g08032 | 3:24,252,669-24,262,291 | - | C2H3g11605 | CX3g028381 | LOC_Os03g45619 | Os03g0658800 | - | Detail |
| C1H3g00885 | 3:24,296,970-24,297,413 | + | C2H3g00843 | CX3g029438 | LOC_Os03g45710 | Os03g0659200 | - | Detail |
| C1H3g09830 | 3:24,298,207-24,300,976 | - | C2H3g07162 | CX3g029511 | LOC_Os03g45720 | Os03g0659300 | - | Detail |
| C1H3g25241 | 3:24,302,054-24,307,297 | - | C2H3g28770 | CX3g026126 | LOC_Os03g45730 | Os03g0659400 | - | Detail |
| C1H3g21268 | 3:24,309,035-24,312,640 | + | - | CX3g030075 | LOC_Os03g56740 | Os04g0578900 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H9g26745 | 9:17,426,590-17,428,151 | + | C1H9g13766 | CX9g055830 | LOC_Os09g35830 | Os09g0527100 | - | Detail |
| C2H9g10324 | 9:17,436,093-17,439,429 | + | C1H9g13766 | CX9g055265 | LOC_Os09g35850 | Os09g0527500 | - | Detail |
| C2H9g01691 | 9:17,443,794-17,445,384 | + | C1H9g07362 | CX9g055927 | LOC_Os09g35860 | Os09g0527600 | - | Detail |
| C2H9g08969 | 9:17,448,493-17,449,274 | - | C1H9g25049 | CX9g056672 | LOC_Os09g35870 | Os09g0527700 | - | Detail |
| C2H9g07509 | 9:17,453,053-17,456,008 | - | C1H9g07553 | CX9g055267 | LOC_Os09g35880 | Os09g0527900 | - | Detail |
| C2H9g28114 | 9:17,461,813-17,465,864 | + | C1H9g01949 | CX9g055134 | LOC_Os09g35890 | Os09g0528000 | - | Detail |
| C2H9g04300 | 9:17,477,350-17,478,193 | + | C1H9g05805 | CX9g055268 | LOC_Os09g35910 | Os09g0528200 | - | Detail |
| C2H9g16123 | 9:17,481,815-17,484,032 | - | C1H9g07637 | CX9g055503 | LOC_Os09g35920 | Os09g0528300 | - | Detail |
| C2H9g26896 | 9:17,495,146-17,497,057 | + | C1H9g29475 | CX9g055183 | LOC_Os09g35940 | Os09g0528700 | - | Detail |
| C2H9g28773 | 9:17,523,780-17,528,824 | - | C1H9g30526 | CX9g055032 | LOC_Os09g35960 | Os09g0528800 | - | Detail |
| C2H9g02120 | 9:17,532,544-17,535,528 | - | C1H9g28769 | CX9g056476 | LOC_Os09g35970 | Os09g0529100 | - | Detail |
| C2H9g25877 | 9:17,538,389-17,546,069 | - | C1H9g03629 | CX9g055769 | LOC_Os09g35980 | Os09g0529300 | SPK, Spk(t), Spk, OsTAC1, TAC1, qTAC9 | Detail |
| C2H9g23489 | 9:17,546,316-17,549,213 | - | C1H9g19525 | CX9g056579 | LOC_Os09g36000 | Os09g0529400 | - | Detail |
| C2H9g27445 | 9:17,549,627-17,553,215 | - | C1H9g27128 | CX9g056877 | LOC_Os09g36020 | Os09g0529700 | OsVPS22 | Detail |
| C2H9g23825 | 9:17,555,063-17,558,905 | + | C1H9g05809 | CX9g055906 | LOC_Os09g36040 | Os09g0530000 | - | Detail |
| C2H9g28583 | 9:17,566,927-17,570,294 | + | C1H9g07466 | CX9g056800 | LOC_Os09g36060 | Os09g0530200 | - | Detail |
| C2H9g03363 | 9:17,570,757-17,573,848 | + | C1H9g12433 | CX9g057922 | LOC_Os09g36070 | Os09g0530275 | - | Detail |
| C2H9g23341 | 9:17,581,105-17,582,729 | + | C1H9g17904 | CX9g056469 | LOC_Os09g36080 | Os09g0530300 | - | Detail |
| C2H9g22638 | 9:17,584,226-17,593,186 | + | C1H9g17327 | CX9g057701 | LOC_Os09g36090 | Os09g0530500 | - | Detail |
| C2H9g01014 | 9:17,593,927-17,596,071 | + | C1H9g09404 | CX9g055918 | LOC_Os09g36100 | Os09g0530700 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |