| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g01904 | 3:23,403,891-23,405,834 | - | C2H3g07109 | CX3g026785 | LOC_Os03g52310 | Os03g0563400 | - | Detail |
| C1H3g20730 | 3:23,405,921-23,407,174 | - | C2H3g21207 | CX3g027695 | LOC_Os03g52310 | Os03g0563400 | - | Detail |
| C1H3g06671 | 3:23,407,184-23,408,387 | - | C2H3g10008 | - | - | Os03g0264950 | - | Detail |
| C1H3g27594 | 3:23,409,332-23,409,727 | - | C2H3g18503 | - | - | - | - | Detail |
| C1H3g09156 | 3:23,411,289-23,416,517 | - | C2H3g26081 | CX3g026196 | LOC_Os03g44050 | Os03g0642600 | - | Detail |
| C1H3g16503 | 3:23,420,216-23,424,022 | - | C2H3g02709 | CX12g016225 | LOC_Os03g44100 | Os03g0642900 | - | Detail |
| C1H3g13161 | 3:23,427,932-23,428,816 | - | C2H3g02627 | CX12g016225 | LOC_Os03g44100 | Os03g0642900 | - | Detail |
| C1H3g16103 | 3:23,431,780-23,434,579 | - | C2H3g02709 | CX12g016225 | LOC_Os03g44140 | Os03g0643000 | - | Detail |
| C1H3g12435 | 3:23,437,347-23,438,414 | - | - | - | - | - | - | Detail |
| C1H3g14328 | 3:23,438,955-23,448,780 | - | C2H3g22187 | CX3g030764 | LOC_Os03g44140 | Os03g0643250 | - | Detail |
| C1H3g15657 | 3:23,450,007-23,453,859 | - | C2H3g09910 | CX3g026745 | LOC_Os03g44150 | Os03g0643300 | OsOAT | Detail |
| C1H3g26318 | 3:23,459,971-23,465,367 | + | C2H3g18518 | CX3g026309 | LOC_Os03g44200 | Os03g0644000 | ATG6B, OsATG6b, OsATG6c | Detail |
| C1H3g21507 | 3:23,465,498-23,470,402 | - | C2H3g26037 | CX3g028043 | LOC_Os03g44210 | Os03g0644200 | WAL3 | Detail |
| C1H3g30497 | 3:23,478,079-23,482,022 | - | C2H3g15139 | CX3g027891 | LOC_Os03g44230 | Os03g0644400 | - | Detail |
| C1H3g01739 | 3:23,488,305-23,489,490 | + | - | - | - | - | - | Detail |
| C1H3g27278 | 3:23,510,948-23,512,494 | + | C2H3g27117 | CX3g031229 | LOC_Os03g44260 | Os03g0644700 | - | Detail |
| C1H3g27224 | 3:23,519,082-23,521,962 | + | C2H3g12166 | CX3g025553 | LOC_Os03g44290 | Os03g0645000 | - | Detail |
| C1H3g30344 | 3:23,527,261-23,527,632 | + | - | CX3g027088 | - | - | - | Detail |
| C1H3g23863 | 3:23,530,249-23,532,923 | + | C2H3g18553 | CX3g025383 | LOC_Os03g44300 | Os03g0645100 | - | Detail |
| C1H3g29402 | 3:23,533,339-23,538,549 | - | C2H3g29997 | CX3g028384 | LOC_Os03g44310 | Os03g0645200 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H2g24840 | 2:1,459,227-1,460,306 | - | C1H2g22701 | CX2g023931 | LOC_Os02g03810 | Os02g0130800 | - | Detail |
| C2H2g02495 | 2:1,460,596-1,464,462 | + | C1H2g15224 | CX2g024589 | LOC_Os02g03820 | Os02g0130900 | - | Detail |
| C2H2g19848 | 2:1,474,131-1,487,088 | + | C1H2g22468 | CX2g021664 | LOC_Os02g03840 | Os02g0131100 | - | Detail |
| C2H2g29791 | 2:1,489,744-1,494,355 | - | C1H2g15765 | CX2g022294 | LOC_Os02g03850 | Os02g0131200 | - | Detail |
| C2H2g01875 | 2:1,494,950-1,498,086 | + | C1H2g24459 | CX2g022118 | LOC_Os02g03860 | Os02g0131300 | - | Detail |
| C2H2g19732 | 2:1,501,219-1,507,407 | - | C1H2g13894 | CX2g019313 | LOC_Os02g03870 | Os02g0131400 | - | Detail |
| C2H2g21277 | 2:1,515,090-1,518,459 | - | C1H2g05041 | CX2g020563 | LOC_Os02g03890 | Os02g0131700 | - | Detail |
| C2H2g13835 | 2:1,522,048-1,525,853 | - | C1H2g18848 | CX2g019095 | LOC_Os02g03900 | Os02g0131800 | NRAMP4, OsNRAMP4, Nrat1, Nramp6, OsNRAT1 | Detail |
| C2H2g22540 | 2:1,530,555-1,535,423 | - | C1H2g00924 | CX2g019802 | LOC_Os02g03930 | Os02g0132100 | - | Detail |
| C2H2g12575 | 2:1,535,853-1,539,352 | - | C1H2g01456 | CX2g018957 | LOC_Os02g03940 | Os02g0132200 | - | Detail |
| C2H2g02428 | 2:1,543,985-1,546,846 | + | C1H2g17223 | CX2g021626 | LOC_Os02g03950 | Os02g0132300 | - | Detail |
| C2H2g10653 | 2:1,558,042-1,558,651 | - | C1H2g04467 | CX2g021994 | LOC_Os02g03960 | Os02g0132500 | OsbZIP14 | Detail |
| C2H2g24972 | 2:1,571,267-1,580,224 | - | C1H2g04799 | CX2g024093 | LOC_Os02g03970 | Os02g0132600 | - | Detail |
| C2H2g13962 | 2:1,595,705-1,597,622 | - | C1H2g29927 | CX2g021970 | LOC_Os02g03990 | - | - | Detail |
| C2H2g06861 | 2:1,598,314-1,598,631 | - | C1H2g29927 | CX2g021970 | LOC_Os02g03990 | - | - | Detail |
| C2H2g19617 | 2:1,602,687-1,606,437 | - | C1H2g20335 | CX2g022112 | LOC_Os02g04010 | Os02g0133000 | - | Detail |
| C2H2g07026 | 2:1,612,616-1,621,430 | + | C1H2g27472 | CX2g024675 | LOC_Os02g04020 | Os02g0133100 | OsSec14-5 | Detail |
| C2H2g19093 | 2:1,622,017-1,623,109 | - | C1H2g25242 | CX2g019449 | LOC_Os02g04030 | Os02g0133200 | OsSec14-6 | Detail |
| C2H2g19264 | 2:1,623,332-1,626,294 | - | C1H2g25242 | CX2g019449 | LOC_Os02g04030 | Os02g0133200 | OsSec14-6 | Detail |
| C2H2g26953 | 2:1,627,447-1,650,977 | - | C1H2g18206 | CX2g024350 | LOC_Os02g04080 | Os02g0133300 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |