| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g17802 | 3:23,008,739-23,012,439 | + | C2H3g26963 | CX3g027391 | LOC_Os03g43670 | Os03g0637800 | OsCR4, MIS2 | Detail |
| C1H3g08726 | 3:23,017,635-23,026,652 | - | C2H3g21555 | CX3g029790 | LOC_Os03g43684 | Os03g0638000 | - | Detail |
| C1H3g11114 | 3:23,044,882-23,049,405 | + | C2H3g25520 | CX3g028463 | LOC_Os03g43720 | Os03g0638200 | - | Detail |
| C1H3g15945 | 3:23,051,002-23,058,423 | - | C2H3g16047 | CX3g029266 | LOC_Os03g43730 | Os03g0638300 | - | Detail |
| C1H3g27096 | 3:23,068,740-23,073,679 | + | C2H3g25175 | CX3g026087 | LOC_Os03g43760 | Os03g0638800 | - | Detail |
| C1H3g11228 | 3:23,109,368-23,125,685 | + | C2H3g20789 | CX3g027536 | LOC_Os03g43800 | - | - | Detail |
| C1H3g08955 | 3:23,136,890-23,137,938 | + | C2H3g02886 | CX3g030991 | LOC_Os03g43810 | Os03g0639300 | OsBP5 | Detail |
| C1H3g23874 | 3:23,138,323-23,139,044 | + | C2H3g02886 | CX3g030991 | LOC_Os03g43810 | Os03g0782500 | PIL13, OsPIL1, OsPIL13, OsbHLH152 | Detail |
| C1H3g03720 | 3:23,224,460-23,228,334 | - | C2H3g22381 | CX3g029268 | LOC_Os03g43840 | Os03g0639600 | - | Detail |
| C1H3g07222 | 3:23,232,911-23,237,552 | + | C2H3g06362 | CX3g025724 | LOC_Os03g43850 | Os03g0639700 | - | Detail |
| C1H3g11773 | 3:23,237,853-23,241,042 | - | C2H3g24990 | CX3g027146 | LOC_Os03g43860 | Os03g0639800 | OsVPS2 | Detail |
| C1H3g13764 | 3:23,270,774-23,278,329 | - | C2H3g01125 | CX3g026102 | LOC_Os03g43890 | Os03g0640100 | OsMSI1 | Detail |
| C1H3g15764 | 3:23,279,567-23,279,926 | - | C2H3g20329 | - | LOC_Os03g43910 | Os03g0640400 | LO9-177 | Detail |
| C1H3g09832 | 3:23,283,146-23,284,835 | - | C2H3g06880 | CX3g025959 | LOC_Os03g43900 | Os03g0640300 | - | Detail |
| C1H3g02135 | 3:23,288,535-23,291,333 | - | C2H3g28747 | - | LOC_Os03g43910 | Os03g0640400 | LO9-177 | Detail |
| C1H3g29126 | 3:23,299,509-23,305,320 | - | C2H3g10248 | CX3g025023 | LOC_Os03g43930 | Os03g0640800 | - | Detail |
| C1H3g01593 | 3:23,340,240-23,345,639 | - | C2H3g24666 | CX3g029177 | LOC_Os03g43970 | Os03g0641200 | - | Detail |
| C1H3g28158 | 3:23,350,428-23,355,402 | - | C2H3g08449 | CX3g025757 | LOC_Os03g43990 | Os03g0767600 | - | Detail |
| C1H3g19477 | 3:23,366,411-23,368,627 | + | C2H3g00183 | CX3g030013 | LOC_Os03g44000 | Os03g0641500 | - | Detail |
| C1H3g24950 | 3:23,372,807-23,375,538 | + | C2H3g23644 | CX3g028634 | LOC_Os03g44010 | Os03g0641700 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H3g28117 | 3:1,639,987-1,647,079 | - | C1H3g14010 | CX3g028134 | LOC_Os03g04130 | Os03g0133800 | - | Detail |
| C2H3g06102 | 3:1,648,125-1,648,348 | - | C1H3g08215 | - | - | Os03g0130350 | - | Detail |
| C2H3g18012 | 3:1,648,629-1,653,167 | - | C1H3g28278 | CX3g028998 | LOC_Os03g04140 | Os03g0133900 | OsSAT3 | Detail |
| C2H3g09036 | 3:1,656,377-1,660,724 | + | C1H3g03246 | CX3g030226 | LOC_Os03g04169 | Os03g0134300 | - | Detail |
| C2H3g27438 | 3:1,661,426-1,663,407 | - | C1H3g21430 | CX3g030747 | LOC_Os03g04190 | Os03g0134500 | - | Detail |
| C2H3g10429 | 3:1,672,325-1,673,484 | + | C1H3g13462 | CX3g028092 | - | - | - | Detail |
| C2H3g12826 | 3:1,674,701-1,675,697 | + | C1H3g21849 | CX3g028352 | LOC_Os03g04210 | Os03g0134800 | - | Detail |
| C2H3g04770 | 3:1,676,236-1,677,702 | - | C1H3g16924 | CX3g027728 | LOC_Os03g04220 | Os03g0134900 | - | Detail |
| C2H3g23886 | 3:1,682,511-1,683,738 | - | C1H3g04141 | CX3g027728 | LOC_Os03g04240 | Os03g0135100 | - | Detail |
| C2H3g23080 | 3:1,685,909-1,686,757 | - | C1H3g09964 | CX3g027728 | LOC_Os03g04250 | Os03g0135200 | - | Detail |
| C2H3g08307 | 3:1,688,274-1,689,226 | - | C1H3g28981 | CX3g027728 | LOC_Os03g04260 | Os03g0135300 | - | Detail |
| C2H3g10421 | 3:1,691,314-1,694,206 | - | C1H3g07565 | CX3g030799 | LOC_Os03g04270 | Os03g0135400 | - | Detail |
| C2H3g21011 | 3:1,699,799-1,708,585 | - | C1H3g05387 | CX3g025620 | LOC_Os03g04300 | Os03g0135600 | - | Detail |
| C2H3g13535 | 3:1,712,626-1,714,592 | - | C1H3g28124 | CX3g028533 | LOC_Os03g04310 | Os03g0135700 | - | Detail |
| C2H3g10458 | 3:1,720,804-1,721,652 | - | C1H3g13645 | - | LOC_Os03g04320 | Os03g0135800 | - | Detail |
| C2H3g08967 | 3:1,732,809-1,733,900 | + | C1H3g26367 | CX3g028470 | LOC_Os03g04340 | Os03g0136200 | - | Detail |
| C2H3g15188 | 3:1,740,919-1,742,499 | - | C1H3g15385 | CX3g025886 | LOC_Os03g04360 | Os03g0136400 | OsPHT1;7 | Detail |
| C2H3g08585 | 3:1,743,266-1,743,688 | + | C1H3g19324 | - | LOC_Os03g04370 | Os03g0136500 | - | Detail |
| C2H3g18976 | 3:1,744,041-1,744,523 | + | C1H3g07268 | CX3g030982 | LOC_Os03g04380 | Os03g0136600 | - | Detail |
| C2H3g17961 | 3:1,745,089-1,747,437 | - | C1H3g01856 | CX3g031134 | LOC_Os03g04390 | Os03g0136700 | OsPGL3A | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |