| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g17802 | 3:23,008,739-23,012,439 | + | C2H3g26963 | CX3g027391 | LOC_Os03g43670 | Os03g0637800 | OsCR4, MIS2 | Detail |
| C1H3g08726 | 3:23,017,635-23,026,652 | - | C2H3g21555 | CX3g029790 | LOC_Os03g43684 | Os03g0638000 | - | Detail |
| C1H3g11114 | 3:23,044,882-23,049,405 | + | C2H3g25520 | CX3g028463 | LOC_Os03g43720 | Os03g0638200 | - | Detail |
| C1H3g15945 | 3:23,051,002-23,058,423 | - | C2H3g16047 | CX3g029266 | LOC_Os03g43730 | Os03g0638300 | - | Detail |
| C1H3g27096 | 3:23,068,740-23,073,679 | + | C2H3g25175 | CX3g026087 | LOC_Os03g43760 | Os03g0638800 | - | Detail |
| C1H3g11228 | 3:23,109,368-23,125,685 | + | C2H3g20789 | CX3g027536 | LOC_Os03g43800 | - | - | Detail |
| C1H3g08955 | 3:23,136,890-23,137,938 | + | C2H3g02886 | CX3g030991 | LOC_Os03g43810 | Os03g0639300 | OsBP5 | Detail |
| C1H3g23874 | 3:23,138,323-23,139,044 | + | C2H3g02886 | CX3g030991 | LOC_Os03g43810 | Os03g0782500 | PIL13, OsPIL1, OsPIL13, OsbHLH152 | Detail |
| C1H3g03720 | 3:23,224,460-23,228,334 | - | C2H3g22381 | CX3g029268 | LOC_Os03g43840 | Os03g0639600 | - | Detail |
| C1H3g07222 | 3:23,232,911-23,237,552 | + | C2H3g06362 | CX3g025724 | LOC_Os03g43850 | Os03g0639700 | - | Detail |
| C1H3g11773 | 3:23,237,853-23,241,042 | - | C2H3g24990 | CX3g027146 | LOC_Os03g43860 | Os03g0639800 | OsVPS2 | Detail |
| C1H3g13764 | 3:23,270,774-23,278,329 | - | C2H3g01125 | CX3g026102 | LOC_Os03g43890 | Os03g0640100 | OsMSI1 | Detail |
| C1H3g15764 | 3:23,279,567-23,279,926 | - | C2H3g20329 | - | LOC_Os03g43910 | Os03g0640400 | LO9-177 | Detail |
| C1H3g09832 | 3:23,283,146-23,284,835 | - | C2H3g06880 | CX3g025959 | LOC_Os03g43900 | Os03g0640300 | - | Detail |
| C1H3g02135 | 3:23,288,535-23,291,333 | - | C2H3g28747 | - | LOC_Os03g43910 | Os03g0640400 | LO9-177 | Detail |
| C1H3g29126 | 3:23,299,509-23,305,320 | - | C2H3g10248 | CX3g025023 | LOC_Os03g43930 | Os03g0640800 | - | Detail |
| C1H3g01593 | 3:23,340,240-23,345,639 | - | C2H3g24666 | CX3g029177 | LOC_Os03g43970 | Os03g0641200 | - | Detail |
| C1H3g28158 | 3:23,350,428-23,355,402 | - | C2H3g08449 | CX3g025757 | LOC_Os03g43990 | Os03g0767600 | - | Detail |
| C1H3g19477 | 3:23,366,411-23,368,627 | + | C2H3g00183 | CX3g030013 | LOC_Os03g44000 | Os03g0641500 | - | Detail |
| C1H3g24950 | 3:23,372,807-23,375,538 | + | C2H3g23644 | CX3g028634 | LOC_Os03g44010 | Os03g0641700 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g18558 | 1:25,325,384-25,336,505 | - | C1H1g27870 | CX1g000580 | LOC_Os01g49470 | Os01g0689451 | OsHRZ1 | Detail |
| C2H1g12129 | 1:25,345,489-25,348,646 | - | C1H1g26809 | CX1g003352 | LOC_Os01g49490 | Os01g0689600 | - | Detail |
| C2H1g09258 | 1:25,362,965-25,365,913 | + | C1H1g26834 | CX1g005650 | LOC_Os01g49510 | Os01g0689800 | - | Detail |
| C2H1g12314 | 1:25,366,474-25,371,587 | - | C1H1g04543 | CX1g005155 | LOC_Os01g49529 | Os01g0136400 | - | Detail |
| C2H1g21144 | 1:25,377,673-25,378,829 | - | C1H1g12707 | CX1g005155 | LOC_Os01g49614 | Os01g0689900 | - | Detail |
| C2H1g03260 | 1:25,389,591-25,390,571 | - | C1H1g28357 | CX1g005155 | LOC_Os01g49560 | Os01g0690200 | - | Detail |
| C2H1g20651 | 1:25,416,910-25,417,884 | + | C1H1g30594 | CX1g005155 | LOC_Os01g49614 | Os01g0689900 | - | Detail |
| C2H1g25605 | 1:25,419,802-25,423,102 | + | C1H1g22621 | CX1g002944 | LOC_Os01g49580 | Os01g0691050 | - | Detail |
| C2H1g18077 | 1:25,441,494-25,443,945 | + | C1H1g27228 | CX1g002944 | LOC_Os01g47070 | Os01g0691050 | - | Detail |
| C2H1g22688 | 1:25,444,601-25,445,930 | - | C1H1g29046 | CX1g001683 | LOC_Os01g49640 | Os01g0691100 | - | Detail |
| C2H1g26124 | 1:25,446,618-25,447,880 | + | C1H1g12678 | CX1g006685 | LOC_Os01g49660 | Os01g0691400 | - | Detail |
| C2H1g16571 | 1:25,448,200-25,452,086 | - | C1H1g11648 | CX1g003503 | LOC_Os01g49670 | Os01g0691500 | - | Detail |
| C2H1g18353 | 1:25,452,196-25,460,110 | + | C1H1g24416 | CX1g003138 | LOC_Os01g49680 | Os01g0691600 | - | Detail |
| C2H1g17191 | 1:25,461,815-25,466,276 | + | C1H1g26359 | CX1g001134 | LOC_Os01g49690 | Os01g0691700 | - | Detail |
| C2H1g11955 | 1:25,473,692-25,474,498 | - | C1H1g16215 | CX1g001038 | LOC_Os01g49710 | Os01g0692000 | - | Detail |
| C2H1g27613 | 1:25,477,332-25,478,129 | - | C1H1g06263 | CX1g001038 | LOC_Os01g49720 | Os01g0692100 | - | Detail |
| C2H1g16812 | 1:25,480,796-25,483,638 | + | C1H1g08026 | CX1g002278 | LOC_Os01g49740 | Os01g0692300 | - | Detail |
| C2H1g01533 | 1:25,489,988-25,494,491 | + | C1H1g09942 | CX1g004143 | LOC_Os01g49760 | Os01g0692600 | - | Detail |
| C2H1g21603 | 1:25,495,333-25,498,845 | - | C1H1g28839 | CX1g006365 | LOC_Os01g49770 | Os01g0692700 | OsSIRH2-23, OsRFPH2-23 | Detail |
| C2H1g03137 | 1:25,509,085-25,510,044 | + | C1H1g28446 | CX1g003738 | LOC_Os01g49810 | Os01g0693100 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |