| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g12219 | 3:22,325,631-22,327,930 | - | C2H3g20166 | CX3g028574 | LOC_Os03g42320 | Os03g0620800 | - | Detail |
| C1H3g22508 | 3:22,339,513-22,345,748 | + | C2H3g02303 | CX3g028555 | LOC_Os03g42350 | Os03g0621400 | - | Detail |
| C1H3g04432 | 3:22,352,614-22,357,617 | + | C2H3g25619 | CX3g025711 | LOC_Os03g42370 | Os03g0621600 | - | Detail |
| C1H3g02847 | 3:22,359,845-22,361,199 | + | C2H3g10252 | CX3g025711 | LOC_Os03g42370 | Os03g0621650 | - | Detail |
| C1H3g27507 | 3:22,364,160-22,368,383 | + | C2H3g03230 | CX3g025711 | LOC_Os03g42410 | Os03g0621900 | - | Detail |
| C1H3g24168 | 3:22,375,301-22,381,885 | + | C2H3g25799 | CX3g026756 | LOC_Os03g42430 | Os03g0622200 | - | Detail |
| C1H3g21229 | 3:22,384,189-22,384,574 | - | C2H3g07291 | CX3g029697 | LOC_Os03g42440 | Os03g0622600 | - | Detail |
| C1H3g08904 | 3:22,400,139-22,400,521 | - | C2H3g28170 | CX3g029697 | LOC_Os03g42480 | Os03g0622600 | - | Detail |
| C1H3g29338 | 3:22,407,131-22,407,838 | + | C2H3g03196 | CX3g025485 | LOC_Os03g42520 | Os03g0623100 | - | Detail |
| C1H3g27916 | 3:22,458,560-22,468,533 | + | C2H3g21699 | CX3g030736 | LOC_Os03g42569 | Os03g0624000 | - | Detail |
| C1H3g08494 | 3:22,493,959-22,495,899 | + | C2H3g25313 | CX3g028370 | LOC_Os03g42630 | Os03g0624600 | - | Detail |
| C1H3g16137 | 3:22,499,711-22,505,056 | + | C2H3g09083 | CX3g027964 | LOC_Os03g42650 | Os03g0624800 | - | Detail |
| C1H3g14712 | 3:22,555,640-22,566,779 | - | C2H3g06917 | CX3g025039 | LOC_Os03g42750 | Os03g0625700 | OsSEC3A | Detail |
| C1H3g19655 | 3:22,571,599-22,573,365 | - | - | - | - | - | - | Detail |
| C1H3g07578 | 3:22,574,713-22,578,021 | + | C2H3g29064 | CX3g029759 | LOC_Os03g42760 | Os03g0625800 | - | Detail |
| C1H3g16517 | 3:22,579,774-22,586,327 | - | C2H3g01975 | CX3g027078 | LOC_Os03g42770 | Os03g0625900 | - | Detail |
| C1H3g21514 | 3:22,592,933-22,595,710 | + | C2H3g08723 | CX3g029343 | LOC_Os03g42780 | Os03g0625933 | - | Detail |
| C1H3g29387 | 3:22,596,138-22,596,857 | + | C2H3g20687 | CX3g029343 | LOC_Os03g42780 | Os03g0626000 | - | Detail |
| C1H3g27155 | 3:22,605,196-22,608,351 | + | C2H3g23218 | CX3g030994 | LOC_Os03g42790 | Os03g0626100 | qGL3.5 | Detail |
| C1H3g08632 | 3:22,618,709-22,620,596 | + | C2H3g15721 | CX3g030519 | LOC_Os03g42810 | Os03g0626500 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H2g22765 | 2:28,236,918-28,237,175 | - | C1H2g07594 | CX2g023200 | - | Os02g0736700 | - | Detail |
| C2H2g11611 | 2:28,240,281-28,240,817 | - | - | CX2g022254 | - | Os02g0736900 | - | Detail |
| C2H2g25731 | 2:28,245,225-28,245,455 | + | - | - | LOC_Os02g50400 | Os02g0737300 | - | Detail |
| C2H2g21919 | 2:28,251,181-28,251,420 | + | C1H2g14249 | - | LOC_Os02g50450 | Os02g0738100 | - | Detail |
| C2H2g10969 | 2:28,257,712-28,259,079 | - | C1H2g14103 | CX2g023707 | LOC_Os02g50460 | Os02g0738200 | - | Detail |
| C2H2g16308 | 2:28,277,648-28,283,562 | + | C1H2g00500 | CX2g021204 | LOC_Os02g50480 | Os02g0738400 | OHK5, OHK5, Ohk5, OsHK1, OsHK6, HK, Crl1a | Detail |
| C2H2g12754 | 2:28,294,300-28,298,676 | + | C1H2g09387 | CX2g020936 | LOC_Os02g50490 | Os02g0738600 | - | Detail |
| C2H2g25440 | 2:28,300,139-28,310,024 | - | C1H2g28406 | CX2g022539 | LOC_Os02g50550 | Os02g0738900 | BC3, bc3, bc-3, OsDRP2B, DRP2B | Detail |
| C2H2g10338 | 2:28,311,660-28,320,928 | + | C1H2g06055 | CX2g024755 | LOC_Os02g50560 | Os02g0739000 | - | Detail |
| C2H2g19070 | 2:28,320,855-28,325,288 | - | C1H2g22155 | CX2g024527 | LOC_Os02g50570 | Os02g0739100 | - | Detail |
| C2H2g12798 | 2:28,334,593-28,335,726 | - | C1H2g26267 | CX2g023617 | LOC_Os02g50600 | Os02g0739400 | - | Detail |
| C2H2g13279 | 2:28,345,355-28,349,094 | - | C1H2g19740 | CX2g023255 | LOC_Os02g50620 | Os02g0739600 | - | Detail |
| C2H2g20599 | 2:28,350,795-28,353,624 | - | C1H2g02446 | CX2g021394 | LOC_Os02g50630 | Os02g0739700 | OsE2Fe-1 | Detail |
| C2H2g22496 | 2:28,356,473-28,360,636 | - | C1H2g01602 | CX2g023514 | LOC_Os02g50640 | Os02g0739900 | - | Detail |
| C2H2g07910 | 2:28,375,801-28,381,895 | - | C1H2g14498 | CX2g021304 | LOC_Os02g50680 | Os02g0740300 | - | Detail |
| C2H2g25866 | 2:28,382,669-28,384,104 | - | C1H2g26149 | CX2g024066 | LOC_Os02g50690 | Os02g0740400 | - | Detail |
| C2H2g26692 | 2:28,387,924-28,388,874 | + | C1H2g27425 | CX2g023069 | LOC_Os02g50700 | Os02g0740500 | - | Detail |
| C2H2g23006 | 2:28,390,599-28,390,880 | - | C1H2g04140 | CX2g024544 | LOC_Os02g50710 | Os02g0740600 | - | Detail |
| C2H2g13251 | 2:28,392,972-28,393,480 | + | - | - | - | - | - | Detail |
| C2H2g10045 | 2:28,393,015-28,394,133 | - | - | CX2g019920 | LOC_Os02g50730 | Os02g0740700 | OsMMP1 | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |