| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g01550 | 3:21,662,840-21,663,194 | - | C2H3g02928 | CX3g027262 | LOC_Os03g41060 | Os03g0607200 | - | Detail |
| C1H3g28561 | 3:21,669,111-21,672,616 | - | C2H3g22608 | CX3g025127 | LOC_Os03g41070 | Os03g0607400 | - | Detail |
| C1H3g18716 | 3:21,674,098-21,679,748 | + | C2H3g05599 | CX3g026140 | LOC_Os03g41080 | Os03g0607500 | - | Detail |
| C1H3g08205 | 3:21,680,807-21,681,585 | + | C2H3g06432 | CX3g026140 | - | - | - | Detail |
| C1H3g26017 | 3:21,683,002-21,685,069 | + | - | CX3g028330 | - | - | - | Detail |
| C1H3g15026 | 3:21,685,553-21,700,570 | + | C2H3g05599 | CX3g026140 | LOC_Os03g41080 | Os03g0607500 | - | Detail |
| C1H3g16629 | 3:21,700,992-21,701,954 | - | C2H3g23306 | CX3g027100 | - | Os03g0653900 | - | Detail |
| C1H3g06149 | 3:21,796,830-21,798,255 | + | - | CX3g030299 | - | - | - | Detail |
| C1H3g12752 | 3:21,798,647-21,799,393 | + | - | - | - | - | - | Detail |
| C1H3g12335 | 3:21,846,333-21,848,146 | + | C2H3g26370 | CX3g029102 | LOC_Os03g41100 | Os03g0607600 | - | Detail |
| C1H3g10600 | 3:21,857,707-21,860,115 | - | C2H3g00849 | CX3g025971 | - | Os03g0607800 | - | Detail |
| C1H3g09655 | 3:21,871,246-21,873,339 | - | C2H3g29100 | - | LOC_Os03g41229 | Os03g0608800 | - | Detail |
| C1H3g05887 | 3:21,884,996-21,887,935 | - | C2H3g01566 | - | LOC_Os03g41229 | Os03g0608800 | - | Detail |
| C1H3g07250 | 3:21,895,678-21,898,236 | + | C2H3g30635 | CX3g029637 | LOC_Os03g41290 | Os03g0609200 | - | Detail |
| C1H3g01434 | 3:21,921,972-21,923,114 | + | C2H3g28367 | CX3g031263 | LOC_Os03g41300 | Os03g0609200 | - | Detail |
| C1H3g20844 | 3:21,927,126-21,929,149 | - | C2H3g17106 | CX3g029907 | LOC_Os03g41330 | Os03g0609500 | OsLBD38 | Detail |
| C1H3g05208 | 3:21,937,523-21,943,478 | - | C2H3g05822 | CX3g029419 | LOC_Os03g41350 | Os03g0609800 | - | Detail |
| C1H3g07399 | 3:21,999,168-22,001,974 | + | C2H3g01072 | CX3g027594 | LOC_Os03g41419 | Os03g0610650 | OsSRP-LRS, OsSPN | Detail |
| C1H3g00375 | 3:22,003,293-22,006,170 | + | C2H3g27553 | CX3g025656 | LOC_Os03g41419 | Os03g0610700 | - | Detail |
| C1H3g27992 | 3:22,008,952-22,015,875 | + | C2H3g00176 | CX3g025656 | LOC_Os03g41419 | Os03g0610800 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H4g18413 | 4:29,693,561-29,699,613 | - | C1H4g12099 | CX4g034422 | LOC_Os04g57670 | Os04g0672700 | - | Detail |
| C2H4g13935 | 4:29,701,445-29,704,747 | + | C1H4g02898 | CX4g031387 | LOC_Os04g57680 | Os04g0672800 | - | Detail |
| C2H4g25125 | 4:29,705,783-29,708,184 | + | C1H4g21333 | CX4g034255 | LOC_Os04g57690 | Os04g0672900 | - | Detail |
| C2H4g28032 | 4:29,709,880-29,714,931 | - | C1H4g29753 | CX4g032895 | LOC_Os04g57700 | Os04g0673000 | - | Detail |
| C2H4g17256 | 4:29,737,558-29,738,174 | + | C1H4g17441 | CX4g036002 | LOC_Os04g57720 | Os04g0673300 | RR6, OsRR6, rr6, Rra6, OsRRA6 | Detail |
| C2H4g16666 | 4:29,745,422-29,749,700 | - | C1H4g06545 | CX4g033276 | LOC_Os04g57730 | Os04g0673400 | - | Detail |
| C2H4g21541 | 4:29,752,035-29,752,662 | - | C1H4g12522 | CX4g032931 | LOC_Os04g57750 | Os04g0673800 | - | Detail |
| C2H4g03386 | 4:29,757,348-29,758,304 | - | C1H4g09977 | - | LOC_Os04g57760 | Os04g0674000 | - | Detail |
| C2H4g22422 | 4:29,766,013-29,768,955 | - | C1H4g25879 | CX4g033668 | LOC_Os04g57780 | Os04g0674100 | - | Detail |
| C2H4g06265 | 4:29,774,553-29,775,787 | + | C1H4g19205 | CX4g033580 | LOC_Os04g57790 | Os04g0674200 | - | Detail |
| C2H4g15166 | 4:29,776,488-29,781,050 | - | C1H4g22285 | CX4g034130 | LOC_Os04g57800 | Os04g0674300 | - | Detail |
| C2H4g17817 | 4:29,783,015-29,783,610 | - | C1H4g01102 | - | - | Os04g0674350 | - | Detail |
| C2H4g23831 | 4:29,783,738-29,786,479 | + | C1H4g13095 | CX4g032486 | LOC_Os04g57810 | Os04g0674400 | OsDRE2a | Detail |
| C2H4g13778 | 4:29,789,504-29,794,076 | + | C1H4g14562 | CX4g036032 | LOC_Os04g57819 | Os04g0674450 | - | Detail |
| C2H4g19163 | 4:29,798,804-29,801,306 | + | C1H4g20705 | - | - | - | - | Detail |
| C2H4g22750 | 4:29,802,403-29,805,885 | - | C1H4g25678 | CX4g034412 | LOC_Os04g57840 | Os04g0674600 | - | Detail |
| C2H4g08185 | 4:29,806,506-29,808,620 | - | C1H4g14424 | CX4g034499 | LOC_Os04g57850 | Os04g0674700 | OsBIABP1 | Detail |
| C2H4g18901 | 4:29,812,600-29,815,642 | - | C1H4g31604 | CX4g031749 | LOC_Os04g57860 | Os04g0674800 | OsRHC | Detail |
| C2H4g07191 | 4:29,818,808-29,824,861 | - | C1H4g22329 | CX4g034095 | LOC_Os04g57870 | Os04g0675000 | - | Detail |
| C2H4g13536 | 4:29,834,270-29,853,732 | + | C1H4g08555 | CX4g033430 | - | Os04g0675300 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002198 | 1:20,359-27,433 | + | C1H1g02341 | C2H1g13015 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| CX1g006968 | 1:28,401-28,688 | - | - | - | - | - | - | Detail |
| CX1g002858 | 1:35,206-37,909 | + | C1H1g23301 | C2H1g25732 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| CX1g003623 | 1:39,279-42,277 | + | C1H1g05541 | C2H1g24136 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| CX1g003961 | 1:59,306-64,835 | + | C1H1g26676 | C2H1g12741 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| CX1g005152 | 1:68,312-70,732 | + | C1H1g29605 | C2H1g30020 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| CX1g004895 | 1:71,762-72,834 | + | C1H1g29605 | C2H1g12698 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| CX1g005861 | 1:73,330-76,018 | - | C1H1g15874 | C2H1g01369 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| CX1g001476 | 1:79,873-83,977 | + | C1H1g31238 | C2H1g16597 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| CX1g002150 | 1:89,271-90,681 | + | C1H1g30351 | C2H1g26722 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| CX1g000559 | 1:93,798-96,636 | + | C1H1g07147 | C2H1g16862 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| CX1g003279 | 1:97,381-97,599 | - | - | C2H1g08637 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| CX1g002179 | 1:98,254-99,849 | - | - | C2H1g21658 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| CX1g004841 | 1:104,203-105,156 | + | C1H1g23624 | C2H1g21224 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| CX1g005639 | 1:108,600-109,925 | + | C1H1g19237 | C2H1g12981 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| CX1g005627 | 1:110,517-112,372 | + | C1H1g02228 | C2H1g13148 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| CX1g006384 | 1:114,118-116,036 | + | C1H1g19000 | C2H1g25133 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| CX1g001371 | 1:116,588-118,780 | + | C1H1g20467 | C2H1g01047 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| CX1g006904 | 1:119,883-124,648 | + | C1H1g21121 | C2H1g05282 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| CX1g005388 | 1:125,436-125,612 | + | - | - | - | - | - | Detail |